CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140548972|140549304
Strand -
CircType exon
Host Gene ENSG00000254996.4;
Algorism CIRI2;
Sequence CCCCCTGCTGCCTCCCTCAGATTCCCGGGGTCACAACTCCTCCAACAGCCCCTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAGGAAGAGATACCCGGTAAGGAAAGCAGGAATTAAGAATTGTCCCAGCCTTTGAGTTCAAATGCCACTGTGACACAGTGCGGGGGTTCAGTTCCAAGAGGGGTTTCTGCACTGATGCTGAGCCTGCAGATCCTCAGACCAGCAACCTGTCTTCCTGCCTTTTCTCTCTCCAGATGACGCACAATTTGAAATGGACATCTAATCCAGTGCAGATGACCTGGCATGTGGAGTTACAGAGGGATCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140548972|140549304 hsa-miR-27a-5p 0 0 1
chr5:140548972|140549304 hsa-miR-27a-3p 0 0 1
chr5:140548972|140549304 hsa-miR-148a-5p 0 0 1
chr5:140548972|140549304 hsa-miR-148a-3p 0 0 1
chr5:140548972|140549304 hsa-miR-205-5p 0 0 1
chr5:140548972|140549304 hsa-miR-205-3p 0 0 1
chr5:140548972|140549304 hsa-miR-210-5p 0 0 1
chr5:140548972|140549304 hsa-miR-210-3p 0 0 1
chr5:140548972|140549304 hsa-miR-214-5p 0 0 1
chr5:140548972|140549304 hsa-miR-214-3p 0 0 1
chr5:140548972|140549304 hsa-miR-27b-5p 0 0 1
chr5:140548972|140549304 hsa-miR-27b-3p 0 0 1
chr5:140548972|140549304 hsa-miR-152-5p 0 0 1
chr5:140548972|140549304 hsa-miR-152-3p 0 0 1
chr5:140548972|140549304 hsa-miR-185-5p 0 0 1
chr5:140548972|140549304 hsa-miR-185-3p 0 0 1
chr5:140548972|140549304 hsa-miR-370-5p 0 0 1
chr5:140548972|140549304 hsa-miR-370-3p 0 0 1
chr5:140548972|140549304 hsa-miR-148b-5p 0 0 1
chr5:140548972|140549304 hsa-miR-148b-3p 0 0 1
chr5:140548972|140549304 hsa-miR-484 1 1 1
chr5:140548972|140549304 hsa-miR-432-5p 0 0 1
chr5:140548972|140549304 hsa-miR-432-3p 0 0 1
chr5:140548972|140549304 hsa-miR-592 0 0 1
chr5:140548972|140549304 hsa-miR-597-5p 0 0 1
chr5:140548972|140549304 hsa-miR-597-3p 0 0 1
chr5:140548972|140549304 hsa-miR-607 0 0 1
chr5:140548972|140549304 hsa-miR-620 0 0 1
chr5:140548972|140549304 hsa-miR-650 0 1 1
chr5:140548972|140549304 hsa-miR-758-5p 0 0 1
chr5:140548972|140549304 hsa-miR-758-3p 0 0 1
chr5:140548972|140549304 hsa-miR-766-5p 0 0 1
chr5:140548972|140549304 hsa-miR-766-3p 0 0 1
chr5:140548972|140549304 hsa-miR-765 0 0 1
chr5:140548972|140549304 hsa-miR-298 0 0 1
chr5:140548972|140549304 hsa-miR-892a 0 0 1
chr5:140548972|140549304 hsa-miR-888-5p 0 0 1
chr5:140548972|140549304 hsa-miR-888-3p 0 0 1
chr5:140548972|140549304 hsa-miR-147b-5p 0 0 1
chr5:140548972|140549304 hsa-miR-147b-3p 0 0 1
chr5:140548972|140549304 hsa-miR-940 0 0 1
chr5:140548972|140549304 hsa-miR-1236-5p 0 0 1
chr5:140548972|140549304 hsa-miR-1236-3p 0 0 1
chr5:140548972|140549304 hsa-miR-1205 0 1 1
chr5:140548972|140549304 hsa-miR-1243 0 0 1
chr5:140548972|140549304 hsa-miR-1256 0 0 1
chr5:140548972|140549304 hsa-miR-1270 0 0 1
chr5:140548972|140549304 hsa-miR-1321 0 0 1
chr5:140548972|140549304 hsa-miR-1827 0 1 1
chr5:140548972|140549304 hsa-miR-1184 0 0 1
chr5:140548972|140549304 hsa-miR-423-5p 0 0 1
chr5:140548972|140549304 hsa-miR-576-3p 0 0 1
chr5:140548972|140549304 hsa-miR-1302 0 1 1
chr5:140548972|140549304 hsa-miR-128 0 0 1
chr5:140548972|140549304 hsa-miR-642 0 0 1
chr5:140548972|140549304 hsa-miR-7 0 0 1
chr5:140548972|140549304 hsa-miR-138 0 0 1
chr5:140548972|140549304 hsa-miR-516b 0 0 1
chr5:140548972|140549304 hsa-miR-24 0 0 1
chr5:140548972|140549304 hsa-miR-768-5p 0 0 1
chr5:140548972|140549304 hsa-miR-1185 0 0 1
chr5:140548972|140549304 hsa-miR-762 1 0 0
chr5:140548972|140549304 hsa-miR-1976 0 1 0
chr5:140548972|140549304 hsa-miR-3155a 0 1 0
chr5:140548972|140549304 hsa-miR-4306 0 1 0
chr5:140548972|140549304 hsa-miR-4326 0 1 0
chr5:140548972|140549304 hsa-miR-4270 0 1 0
chr5:140548972|140549304 hsa-miR-3155b 0 1 0
chr5:140548972|140549304 hsa-miR-4510 0 1 0
chr5:140548972|140549304 hsa-miR-1587 1 0 0
chr5:140548972|140549304 hsa-miR-4538 1 1 0
chr5:140548972|140549304 hsa-miR-4644 1 1 0
chr5:140548972|140549304 hsa-miR-4656 1 0 0
chr5:140548972|140549304 hsa-miR-4739 0 1 0
chr5:140548972|140549304 hsa-miR-4741 1 1 0
chr5:140548972|140549304 hsa-miR-5693 0 1 0
chr5:140548972|140549304 hsa-miR-5739 0 1 0
chr5:140548972|140549304 hsa-miR-5787 1 0 0
chr5:140548972|140549304 hsa-miR-6085 0 1 0
chr5:140548972|140549304 hsa-miR-6124 0 1 0
chr5:140548972|140549304 hsa-miR-6127 0 1 0
chr5:140548972|140549304 hsa-miR-378j 0 1 0
chr5:140548972|140549304 hsa-miR-6131 0 1 0
chr5:140548972|140549304 hsa-miR-6133 0 1 0
chr5:140548972|140549304 hsa-miR-7974 1 0 0
chr5:140548972|140549304 hsa-miR-9985 0 1 0
chr5:140548972|140549304 hsa-miR-12119 0 1 0
chr5:140548972|140549304 hsa-miR-12122 0 1 0
chr5:140548972|140549304 hsa-miR-1247-3p 0 1 0
chr5:140548972|140549304 hsa-miR-7106-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6857-5p 1 0 0
chr5:140548972|140549304 hsa-miR-4687-3p 1 1 0
chr5:140548972|140549304 hsa-miR-7851-3p 1 0 0
chr5:140548972|140549304 hsa-miR-6089 1 0 0
chr5:140548972|140549304 hsa-miR-4722-5p 1 0 0
chr5:140548972|140549304 hsa-miR-7154-3p 0 1 0
chr5:140548972|140549304 hsa-miR-24-3p 0 1 0
chr5:140548972|140549304 hsa-miR-4655-5p 1 0 0
chr5:140548972|140549304 hsa-miR-3663-5p 0 1 0
chr5:140548972|140549304 hsa-miR-4711-5p 0 1 0
chr5:140548972|140549304 hsa-miR-2467-3p 1 0 0
chr5:140548972|140549304 hsa-miR-6782-5p 1 0 0
chr5:140548972|140549304 hsa-miR-4793-3p 0 1 0
chr5:140548972|140549304 hsa-miR-6818-3p 0 1 0
chr5:140548972|140549304 hsa-miR-6780a-3p 0 1 0
chr5:140548972|140549304 hsa-miR-3648 1 0 0
chr5:140548972|140549304 hsa-miR-6736-3p 0 1 0
chr5:140548972|140549304 hsa-miR-516b-5p 0 1 0
chr5:140548972|140549304 hsa-miR-106b-3p 0 1 0
chr5:140548972|140549304 hsa-miR-2276-5p 0 1 0
chr5:140548972|140549304 hsa-miR-216a-3p 0 1 0
chr5:140548972|140549304 hsa-miR-3074-5p 0 1 0
chr5:140548972|140549304 hsa-miR-503-3p 0 1 0
chr5:140548972|140549304 hsa-miR-3200-5p 0 1 0
chr5:140548972|140549304 hsa-miR-204-5p 0 1 0
chr5:140548972|140549304 hsa-miR-5587-3p 0 1 0
chr5:140548972|140549304 hsa-miR-6888-3p 0 1 0
chr5:140548972|140549304 hsa-miR-4524b-3p 0 1 0
chr5:140548972|140549304 hsa-miR-1207-5p 1 0 0
chr5:140548972|140549304 hsa-miR-4763-3p 1 0 0
chr5:140548972|140549304 hsa-miR-6752-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6754-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6756-5p 1 0 0
chr5:140548972|140549304 hsa-miR-1249-5p 0 1 0
chr5:140548972|140549304 hsa-miR-6797-5p 1 1 0
chr5:140548972|140549304 hsa-miR-6808-5p 1 1 0
chr5:140548972|140549304 hsa-miR-6879-5p 1 0 0
chr5:140548972|140549304 hsa-miR-7111-5p 0 1 0
chr5:140548972|140549304 hsa-miR-3620-5p 1 0 0
chr5:140548972|140549304 hsa-miR-4728-5p 1 1 0
chr5:140548972|140549304 hsa-miR-1909-3p 1 0 0
chr5:140548972|140549304 hsa-miR-328-5p 1 1 0
chr5:140548972|140549304 hsa-miR-4745-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6735-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6777-5p 1 0 0
chr5:140548972|140549304 hsa-miR-4436b-3p 1 1 0
chr5:140548972|140549304 hsa-miR-939-5p 1 0 0
chr5:140548972|140549304 hsa-miR-6511b-5p 0 1 0
chr5:140548972|140549304 hsa-miR-6758-5p 0 1 0
chr5:140548972|140549304 hsa-miR-6856-5p 0 1 0
chr5:140548972|140549304 hsa-miR-4665-5p 0 1 0
chr5:140548972|140549304 hsa-miR-4667-5p 0 1 0
chr5:140548972|140549304 hsa-miR-6791-5p 1 0 0
chr5:140548972|140549304 hsa-miR-3059-5p 0 1 0
chr5:140548972|140549304 hsa-miR-6811-5p 0 1 0
chr5:140548972|140549304 hsa-miR-3913-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr5:140548972|140549304
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MLPPSDSRGHNSSNSPSLQAGGAEGAGDRGRDTR
Nucleotide Sequence CTGCTGCCTCCCTCAGATTCCCGGGGTCACAACTCCTCCAACAGCCCCTCTCTCCAAGCTGGAGGAGCTGAAGGAGCAGGAGACAGAGGAAGAGATACCCGGTAA

CircID chr5:140548972|140549304
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MSSCLFSLQMTHNLKWTSNPVQMTWHVELQRD
Nucleotide Sequence CTGTCTTCCTGCCTTTTCTCTCTCCAGATGACGCACAATTTGAAATGGACATCTAATCCAGTGCAGATGACCTGGCATGTGGAGTTACAGAGGGAT

CircID chr5:140548972|140549304
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MSQPLSSNATVTQCGGSVPRGVSALMLSLQILRPATCLPAFSLSR
Nucleotide Sequence TTGTCCCAGCCTTTGAGTTCAAATGCCACTGTGACACAGTGCGGGGGTTCAGTTCCAAGAGGGGTTTCTGCACTGATGCTGAGCCTGCAGATCCTCAGACCAGCAACCTGTCTTCCTGCCTTTTCTCTCTCCAGATGA

CircID chr5:140548972|140549304
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MELNPRTVSQWHLNSKAGTILNSCFPYRVSLPLSPAPSAPPAWREGLLEEL
Nucleotide Sequence TTGGAACTGAACCCCCGCACTGTGTCACAGTGGCATTTGAACTCAAAGGCTGGGACAATTCTTAATTCCTGCTTTCCTTACCGGGTATCTCTTCCTCTGTCTCCTGCTCCTTCAGCTCCTCCAGCTTGGAGAGAGGGGCTGTTGGAGGAGTTGTGA

CircID chr5:140548972|140549304
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MSISNCASSGERKGRKTGCWSEDLQAQHQCRNPSWN
Nucleotide Sequence ATGTCCATTTCAAATTGTGCGTCATCTGGAGAGAGAAAAGGCAGGAAGACAGGTTGCTGGTCTGAGGATCTGCAGGCTCAGCATCAGTGCAGAAACCCCTCTTGGAACTGA

CircID chr5:140548972|140549304
ORF Type ORF6
Protein Length 45
Nucleotide Length 135
Protein Sequence MGQFLIPAFLTGYLFLCLLLLQLLQLGERGCWRSCDPGNLREAAG
Nucleotide Sequence CTGGGACAATTCTTAATTCCTGCTTTCCTTACCGGGTATCTCTTCCTCTGTCTCCTGCTCCTTCAGCTCCTCCAGCTTGGAGAGAGGGGCTGTTGGAGGAGTTGTGACCCCGGGAATCTGAGGGAGGCAGCAGGG

CircID chr5:140548972|140549304
ORF Type ORF7
Protein Length 63
Nucleotide Length 192
Protein Sequence MPGHLHWIRCPFQIVRHLEREKAGRQVAGLRICRLSISAETPLGTEPPHCVTVAFELKGWDNS
Nucleotide Sequence ATGCCAGGTCATCTGCACTGGATTAGATGTCCATTTCAAATTGTGCGTCATCTGGAGAGAGAAAAGGCAGGAAGACAGGTTGCTGGTCTGAGGATCTGCAGGCTCAGCATCAGTGCAGAAACCCCTCTTGGAACTGAACCCCCGCACTGTGTCACAGTGGCATTTGAACTCAAAGGCTGGGACAATTCTTAA

CircID chr5:140548972|140549304
ORF Type ORF8
Protein Length 33
Nucleotide Length 102
Protein Sequence MLSLPGISSSVSCSFSSSSLERGAVGGVVTPGI
Nucleotide Sequence CTGCTTTCCTTACCGGGTATCTCTTCCTCTGTCTCCTGCTCCTTCAGCTCCTCCAGCTTGGAGAGAGGGGCTGTTGGAGGAGTTGTGACCCCGGGAATCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites