CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140550591|140550745
Strand +
CircType exon
Host Gene ENSG00000213523.8;
Algorism CIRI2;
Sequence AGCTGAGAAGAACCATACCATACCAGGCTTCCAGCAGGCTTCATAATCCTCGGTTCCCCAGACTCACCGGACACCATCTCCTATGCCTTGGAGACCTTCTGTCACTTGGCTCCCTTCTTACCACCACCAAGACTGTCCCACTGGGCCTGACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140550591|140550745 hsa-miR-370-5p 0 0 1
chr5:140550591|140550745 hsa-miR-370-3p 0 0 1
chr5:140550591|140550745 hsa-miR-493-5p 0 0 1
chr5:140550591|140550745 hsa-miR-493-3p 0 0 1
chr5:140550591|140550745 hsa-miR-584-5p 0 0 1
chr5:140550591|140550745 hsa-miR-584-3p 0 0 1
chr5:140550591|140550745 hsa-miR-596 0 1 1
chr5:140550591|140550745 hsa-miR-627-5p 0 0 1
chr5:140550591|140550745 hsa-miR-627-3p 0 0 1
chr5:140550591|140550745 hsa-miR-637 1 0 1
chr5:140550591|140550745 hsa-miR-924 0 0 1
chr5:140550591|140550745 hsa-miR-942-5p 0 0 1
chr5:140550591|140550745 hsa-miR-942-3p 0 0 1
chr5:140550591|140550745 hsa-miR-1287-5p 0 0 1
chr5:140550591|140550745 hsa-miR-1287-3p 0 0 1
chr5:140550591|140550745 hsa-miR-671-5p 1 1 1
chr5:140550591|140550745 hsa-miR-876-3p 0 0 1
chr5:140550591|140550745 hsa-miR-1302 0 0 1
chr5:140550591|140550745 hsa-miR-515-5p 0 0 1
chr5:140550591|140550745 hsa-miR-542-3p 0 0 1
chr5:140550591|140550745 hsa-miR-323-5p 0 0 1
chr5:140550591|140550745 hsa-miR-608 1 0 0
chr5:140550591|140550745 hsa-miR-622 1 0 0
chr5:140550591|140550745 hsa-miR-762 1 0 0
chr5:140550591|140550745 hsa-miR-1182 1 0 0
chr5:140550591|140550745 hsa-miR-1231 1 0 0
chr5:140550591|140550745 hsa-miR-2110 1 0 0
chr5:140550591|140550745 hsa-miR-3147 1 0 0
chr5:140550591|140550745 hsa-miR-3154 1 1 0
chr5:140550591|140550745 hsa-miR-1193 0 1 0
chr5:140550591|140550745 hsa-miR-4298 1 1 0
chr5:140550591|140550745 hsa-miR-3650 1 0 0
chr5:140550591|140550745 hsa-miR-3945 1 1 0
chr5:140550591|140550745 hsa-miR-4480 0 1 0
chr5:140550591|140550745 hsa-miR-4644 1 0 0
chr5:140550591|140550745 hsa-miR-4647 1 0 0
chr5:140550591|140550745 hsa-miR-4658 1 0 0
chr5:140550591|140550745 hsa-miR-4669 1 1 0
chr5:140550591|140550745 hsa-miR-4686 1 0 0
chr5:140550591|140550745 hsa-miR-4739 1 0 0
chr5:140550591|140550745 hsa-miR-5090 1 0 0
chr5:140550591|140550745 hsa-miR-5787 1 0 0
chr5:140550591|140550745 hsa-miR-6075 1 0 0
chr5:140550591|140550745 hsa-miR-6079 0 1 0
chr5:140550591|140550745 hsa-miR-8089 1 1 0
chr5:140550591|140550745 hsa-miR-6734-5p 1 0 0
chr5:140550591|140550745 hsa-miR-125b-1-3p 1 0 0
chr5:140550591|140550745 hsa-miR-125a-3p 1 0 0
chr5:140550591|140550745 hsa-miR-3692-5p 0 1 0
chr5:140550591|140550745 hsa-miR-3622a-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6089 1 0 0
chr5:140550591|140550745 hsa-miR-6880-5p 1 0 0
chr5:140550591|140550745 hsa-miR-3622b-5p 1 0 0
chr5:140550591|140550745 hsa-miR-7845-5p 1 0 0
chr5:140550591|140550745 hsa-miR-3605-5p 1 0 0
chr5:140550591|140550745 hsa-miR-491-5p 1 0 0
chr5:140550591|140550745 hsa-miR-3151-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6827-5p 1 1 0
chr5:140550591|140550745 hsa-miR-6798-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6881-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6786-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6740-5p 1 0 0
chr5:140550591|140550745 hsa-miR-4786-3p 1 0 0
chr5:140550591|140550745 hsa-miR-1229-5p 1 0 0
chr5:140550591|140550745 hsa-miR-4640-5p 1 0 0
chr5:140550591|140550745 hsa-miR-92b-5p 1 0 0
chr5:140550591|140550745 hsa-miR-937-5p 1 0 0
chr5:140550591|140550745 hsa-miR-7843-3p 0 1 0
chr5:140550591|140550745 hsa-miR-194-3p 0 1 0
chr5:140550591|140550745 hsa-miR-7846-3p 1 0 0
chr5:140550591|140550745 hsa-miR-6720-3p 1 0 0
chr5:140550591|140550745 hsa-miR-4774-5p 0 1 0
chr5:140550591|140550745 hsa-miR-1207-5p 1 0 0
chr5:140550591|140550745 hsa-miR-1233-5p 1 0 0
chr5:140550591|140550745 hsa-miR-4763-3p 1 0 0
chr5:140550591|140550745 hsa-miR-6769b-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6778-5p 1 0 0
chr5:140550591|140550745 hsa-miR-1343-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6726-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6743-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6756-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6769a-5p 1 1 0
chr5:140550591|140550745 hsa-miR-6803-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6815-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6842-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6851-5p 1 0 0
chr5:140550591|140550745 hsa-miR-1249-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6763-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6797-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6875-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6780b-5p 1 0 0
chr5:140550591|140550745 hsa-miR-10526-3p 1 0 0
chr5:140550591|140550745 hsa-miR-328-5p 1 0 0
chr5:140550591|140550745 hsa-miR-4685-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6794-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6795-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6883-5p 1 0 0
chr5:140550591|140550745 hsa-miR-6889-5p 1 0 0
chr5:140550591|140550745 hsa-miR-4723-5p 1 0 0
chr5:140550591|140550745 hsa-miR-939-5p 1 1 0
chr5:140550591|140550745 hsa-miR-3198 1 0 0
chr5:140550591|140550745 hsa-miR-4700-5p 1 1 0
chr5:140550591|140550745 hsa-miR-4667-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:140550591|140550745
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LRRTIPYQASSRLHNPRFPRLTGHHLLCLGDLLSLGSLLTTTKTVPLGLTH
Nucleotide Sequence CTGAGAAGAACCATACCATACCAGGCTTCCAGCAGGCTTCATAATCCTCGGTTCCCCAGACTCACCGGACACCATCTCCTATGCCTTGGAGACCTTCTGTCACTTGGCTCCCTTCTTACCACCACCAAGACTGTCCCACTGGGCCTGACCCAC
CircID chr5:140550591|140550745
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MVSGESGEPRIMKPAGSLVWYGSSQ
Nucleotide Sequence ATGGTGTCCGGTGAGTCTGGGGAACCGAGGATTATGAAGCCTGCTGGAAGCCTGGTATGGTATGGTTCTTCTCAG
CircID chr5:140550591|140550745
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MVVVRREPSDRRSPRHRRWCPVSLGNRGL
Nucleotide Sequence TTGGTGGTGGTAAGAAGGGAGCCAAGTGACAGAAGGTCTCCAAGGCATAGGAGATGGTGTCCGGTGAGTCTGGGGAACCGAGGATTATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab