CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140661674|140661977
Strand -
CircType exon
Host Gene ENSG00000113141.14;
Algorism CIRI2;
Sequence AGCGAGTATATGAACAACAAAGAAGCTTTGCCCAAGTGAGTCGGTACTGAATATGGGCAGGGTGTGAGGAGGGGTGTGGGGATTTGGTGGAATAGTGCATATAAGGTTAGAGGGTGTGGTCTGGCTGAGATGTTCCCCACTAAGTTCTTTGCCCACAGGACTCTGGGAAAACCTCGCCACTGCTATGCAATCTCTGATGCATTCTTTCCCAACTGCTTTTTTCAGGGCTGCATTCCAGTATGGTATCAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140661674|140661977 hsa-miR-186-5p 0 0 1
chr5:140661674|140661977 hsa-miR-186-3p 0 0 1
chr5:140661674|140661977 hsa-miR-206 0 0 1
chr5:140661674|140661977 hsa-miR-448 0 0 1
chr5:140661674|140661977 hsa-miR-605-5p 0 0 1
chr5:140661674|140661977 hsa-miR-605-3p 0 0 1
chr5:140661674|140661977 hsa-miR-613 0 0 1
chr5:140661674|140661977 hsa-miR-616-5p 0 0 1
chr5:140661674|140661977 hsa-miR-616-3p 0 0 1
chr5:140661674|140661977 hsa-miR-635 0 0 1
chr5:140661674|140661977 hsa-miR-1228-5p 0 0 1
chr5:140661674|140661977 hsa-miR-1228-3p 0 0 1
chr5:140661674|140661977 hsa-miR-1206 0 0 1
chr5:140661674|140661977 hsa-miR-1243 0 0 1
chr5:140661674|140661977 hsa-miR-1249-5p 0 0 1
chr5:140661674|140661977 hsa-miR-1249-3p 0 0 1
chr5:140661674|140661977 hsa-miR-1324 0 0 1
chr5:140661674|140661977 hsa-miR-127-5p 0 0 1
chr5:140661674|140661977 hsa-miR-491-5p 0 1 1
chr5:140661674|140661977 hsa-miR-502-5p 0 0 1
chr5:140661674|140661977 hsa-miR-502-3p 0 0 1
chr5:140661674|140661977 hsa-miR-501-3p 0 0 1
chr5:140661674|140661977 hsa-miR-342-3p 0 0 1
chr5:140661674|140661977 hsa-miR-153 0 0 1
chr5:140661674|140661977 hsa-miR-1 0 0 1
chr5:140661674|140661977 hsa-miR-220a 0 0 1
chr5:140661674|140661977 hsa-miR-1259 0 0 1
chr5:140661674|140661977 hsa-miR-572 1 0 0
chr5:140661674|140661977 hsa-miR-612 0 1 0
chr5:140661674|140661977 hsa-miR-718 1 1 0
chr5:140661674|140661977 hsa-miR-3153 0 1 0
chr5:140661674|140661977 hsa-miR-4322 0 1 0
chr5:140661674|140661977 hsa-miR-3978 0 1 0
chr5:140661674|140661977 hsa-miR-5193 0 1 0
chr5:140661674|140661977 hsa-miR-7706 1 1 0
chr5:140661674|140661977 hsa-miR-3157-5p 0 1 0
chr5:140661674|140661977 hsa-miR-6892-3p 1 0 0
chr5:140661674|140661977 hsa-miR-345-3p 0 1 0
chr5:140661674|140661977 hsa-miR-4793-5p 1 0 0
chr5:140661674|140661977 hsa-miR-4667-3p 0 1 0
chr5:140661674|140661977 hsa-miR-7156-3p 0 1 0
chr5:140661674|140661977 hsa-miR-6786-3p 1 0 0
chr5:140661674|140661977 hsa-miR-3145-3p 0 1 0
chr5:140661674|140661977 hsa-miR-6887-3p 0 1 0
chr5:140661674|140661977 hsa-miR-4727-3p 0 1 0
chr5:140661674|140661977 hsa-miR-381-5p 0 1 0
chr5:140661674|140661977 hsa-miR-6752-3p 0 1 0
chr5:140661674|140661977 hsa-miR-6865-3p 1 1 0
chr5:140661674|140661977 hsa-miR-6886-3p 1 0 0
chr5:140661674|140661977 hsa-miR-4766-5p 0 1 0
chr5:140661674|140661977 hsa-miR-3620-3p 1 1 0
chr5:140661674|140661977 hsa-miR-329-5p 0 1 0
chr5:140661674|140661977 hsa-miR-6800-3p 1 1 0
chr5:140661674|140661977 hsa-miR-6731-3p 0 1 0
chr5:140661674|140661977 hsa-miR-6774-5p 0 1 0
chr5:140661674|140661977 hsa-miR-541-3p 0 1 0
chr5:140661674|140661977 hsa-miR-6756-3p 1 0 0
chr5:140661674|140661977 hsa-miR-6792-3p 1 0 0
chr5:140661674|140661977 hsa-miR-1234-3p 1 0 0
chr5:140661674|140661977 hsa-miR-6764-5p 0 1 0
chr5:140661674|140661977 hsa-miR-6733-5p 0 1 0
chr5:140661674|140661977 hsa-miR-301a-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:140661674|140661977
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MAEMFPTKFFAHRTLGKPRHCYAISDAFFPNCFFQGCIPVWYQNV
Nucleotide Sequence CTGGCTGAGATGTTCCCCACTAAGTTCTTTGCCCACAGGACTCTGGGAAAACCTCGCCACTGCTATGCAATCTCTGATGCATTCTTTCCCAACTGCTTTTTTCAGGGCTGCATTCCAGTATGGTATCAAAATGTCTGA
CircID chr5:140661674|140661977
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MRCSPLSSLPTGLWENLATAMQSLMHSFPTAFFRAAFQYGIKMSEGRKTRRFKETNDKAE
Nucleotide Sequence CTGAGATGTTCCCCACTAAGTTCTTTGCCCACAGGACTCTGGGAAAACCTCGCCACTGCTATGCAATCTCTGATGCATTCTTTCCCAACTGCTTTTTTCAGGGCTGCATTCCAGTATGGTATCAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAGAG
CircID chr5:140661674|140661977
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MLFSGLHSSMVSKCLKGGKPGASRKPMTKQ
Nucleotide Sequence CTGCTTTTTTCAGGGCTGCATTCCAGTATGGTATCAAAATGTCTGAAGGGCGGAAAACCAGGCGCTTCAAGGAAACCAATGACAAAGCAG
CircID chr5:140661674|140661977
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MECSPEKSSWERMHQRLHSSGEVFPESCGQRT
Nucleotide Sequence CTGGAATGCAGCCCTGAAAAAAGCAGTTGGGAAAGAATGCATCAGAGATTGCATAGCAGTGGCGAGGTTTTCCCAGAGTCCTGTGGGCAAAGAACTTAG
CircID chr5:140661674|140661977
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MHYSTKSPHPSSHPAHIQYRLTWAKLLCCSYTR
Nucleotide Sequence ATGCACTATTCCACCAAATCCCCACACCCCTCCTCACACCCTGCCCATATTCAGTACCGACTCACTTGGGCAAAGCTTCTTTGTTGTTCATATACTCGC
CircID chr5:140661674|140661977
ORF Type ORF6
Protein Length 99
Nucleotide Length 297
Protein Sequence MSLVSLKRLVFRPSDILIPYWNAALKKAVGKECIRDCIAVARFSQSPVGKELSGEHLSQTTPSNLICTIPPNPHTPPHTLPIFSTDSLGQSFFVVHILA
Nucleotide Sequence TTGTCATTGGTTTCCTTGAAGCGCCTGGTTTTCCGCCCTTCAGACATTTTGATACCATACTGGAATGCAGCCCTGAAAAAAGCAGTTGGGAAAGAATGCATCAGAGATTGCATAGCAGTGGCGAGGTTTTCCCAGAGTCCTGTGGGCAAAGAACTTAGTGGGGAACATCTCAGCCAGACCACACCCTCTAACCTTATATGCACTATTCCACCAAATCCCCACACCCCTCCTCACACCCTGCCCATATTCAGTACCGACTCACTTGGGCAAAGCTTCTTTGTTGTTCATATACTCGCT
CircID chr5:140661674|140661977
ORF Type ORF7
Protein Length 52
Nucleotide Length 156
Protein Sequence MWAKNLVGNISARPHPLTLYALFHQIPTPLLTPCPYSVPTHLGKASLLFIYS
Nucleotide Sequence CTGTGGGCAAAGAACTTAGTGGGGAACATCTCAGCCAGACCACACCCTCTAACCTTATATGCACTATTCCACCAAATCCCCACACCCCTCCTCACACCCTGCCCATATTCAGTACCGACTCACTTGGGCAAAGCTTCTTTGTTGTTCATATACTCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab