CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140676849|140677084
Strand -
CircType exon
Host Gene ENSG00000170445.11;
Algorism CIRI2;
Sequence CCCAGTGTAGTAATCCAGCCCTCGAGCAAGGCTCAGGTCAAAGGAGATCTGTGGAGATAAGAAAATGGTCAGTGCCAGATTAAGATCAGGGACCTGAAGCCCCAGAGCTCAGAAGGGATCCCGTCCCCAACTTGACTCACTTTGTCATCAATGCCAAATAGGGTCAGGTACTCAAAGAGCAACTTCAGGTCTCCCAGGCCCTCCAAGGCCTGCTTGTTTTGGGATAGTTTAGGATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140676849|140677084 hsa-miR-96-5p 0 0 1
chr5:140676849|140677084 hsa-miR-96-3p 0 0 1
chr5:140676849|140677084 hsa-miR-192-5p 0 0 1
chr5:140676849|140677084 hsa-miR-192-3p 0 0 1
chr5:140676849|140677084 hsa-miR-182-5p 0 0 1
chr5:140676849|140677084 hsa-miR-182-3p 0 0 1
chr5:140676849|140677084 hsa-miR-215-5p 0 0 1
chr5:140676849|140677084 hsa-miR-215-3p 0 0 1
chr5:140676849|140677084 hsa-miR-326 0 0 1
chr5:140676849|140677084 hsa-miR-432-5p 0 0 1
chr5:140676849|140677084 hsa-miR-432-3p 0 0 1
chr5:140676849|140677084 hsa-miR-520g-5p 0 0 1
chr5:140676849|140677084 hsa-miR-520g-3p 0 0 1
chr5:140676849|140677084 hsa-miR-520h 0 0 1
chr5:140676849|140677084 hsa-miR-504-5p 0 0 1
chr5:140676849|140677084 hsa-miR-504-3p 0 0 1
chr5:140676849|140677084 hsa-miR-591 0 0 1
chr5:140676849|140677084 hsa-miR-631 0 0 1
chr5:140676849|140677084 hsa-miR-637 1 0 1
chr5:140676849|140677084 hsa-miR-661 0 0 1
chr5:140676849|140677084 hsa-miR-1271-5p 0 0 1
chr5:140676849|140677084 hsa-miR-1271-3p 0 0 1
chr5:140676849|140677084 hsa-miR-1237-5p 0 0 1
chr5:140676849|140677084 hsa-miR-1237-3p 0 0 1
chr5:140676849|140677084 hsa-miR-1287-5p 0 0 1
chr5:140676849|140677084 hsa-miR-1287-3p 0 0 1
chr5:140676849|140677084 hsa-miR-1256 1 0 1
chr5:140676849|140677084 hsa-miR-769-5p 1 1 1
chr5:140676849|140677084 hsa-miR-188-5p 0 0 1
chr5:140676849|140677084 hsa-miR-125a-5p 0 0 1
chr5:140676849|140677084 hsa-miR-330-5p 0 1 1
chr5:140676849|140677084 hsa-miR-125b 0 0 1
chr5:140676849|140677084 hsa-miR-768-5p 0 0 1
chr5:140676849|140677084 hsa-miR-638 1 0 0
chr5:140676849|140677084 hsa-miR-760 0 1 0
chr5:140676849|140677084 hsa-miR-4259 0 1 0
chr5:140676849|140677084 hsa-miR-3659 1 0 0
chr5:140676849|140677084 hsa-miR-4488 1 0 0
chr5:140676849|140677084 hsa-miR-4507 1 0 0
chr5:140676849|140677084 hsa-miR-1587 1 0 0
chr5:140676849|140677084 hsa-miR-4683 1 0 0
chr5:140676849|140677084 hsa-miR-8089 1 0 0
chr5:140676849|140677084 hsa-miR-11399 0 1 0
chr5:140676849|140677084 hsa-miR-7851-3p 1 1 0
chr5:140676849|140677084 hsa-miR-6515-5p 1 1 0
chr5:140676849|140677084 hsa-miR-3192-5p 0 1 0
chr5:140676849|140677084 hsa-miR-127-3p 0 1 0
chr5:140676849|140677084 hsa-miR-4753-3p 0 1 0
chr5:140676849|140677084 hsa-miR-6810-5p 1 1 0
chr5:140676849|140677084 hsa-miR-345-3p 1 0 0
chr5:140676849|140677084 hsa-miR-939-3p 0 1 0
chr5:140676849|140677084 hsa-miR-7109-5p 1 0 0
chr5:140676849|140677084 hsa-miR-1226-5p 0 1 0
chr5:140676849|140677084 hsa-miR-7161-3p 0 1 0
chr5:140676849|140677084 hsa-miR-4690-5p 0 1 0
chr5:140676849|140677084 hsa-miR-92b-5p 0 1 0
chr5:140676849|140677084 hsa-miR-6749-5p 1 0 0
chr5:140676849|140677084 hsa-miR-4446-3p 0 1 0
chr5:140676849|140677084 hsa-miR-937-5p 0 1 0
chr5:140676849|140677084 hsa-miR-6825-3p 1 0 0
chr5:140676849|140677084 hsa-miR-5088-3p 0 1 0
chr5:140676849|140677084 hsa-miR-3126-3p 1 0 0
chr5:140676849|140677084 hsa-miR-1911-5p 0 1 0
chr5:140676849|140677084 hsa-miR-670-5p 0 1 0
chr5:140676849|140677084 hsa-miR-10400-5p 1 0 0
chr5:140676849|140677084 hsa-miR-6816-5p 1 0 0
chr5:140676849|140677084 hsa-miR-5001-5p 0 1 0
chr5:140676849|140677084 hsa-miR-6779-5p 1 0 0
chr5:140676849|140677084 hsa-miR-4755-5p 0 1 0
chr5:140676849|140677084 hsa-miR-6866-3p 0 1 0
chr5:140676849|140677084 hsa-miR-3620-5p 1 0 0
chr5:140676849|140677084 hsa-miR-6846-5p 1 0 0
chr5:140676849|140677084 hsa-miR-939-5p 1 0 0
chr5:140676849|140677084 hsa-miR-6751-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:140676849|140677084
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MSSMPNRVRYSKSNFRSPRPSKACLFWDSLG
Nucleotide Sequence TTGTCATCAATGCCAAATAGGGTCAGGTACTCAAAGAGCAACTTCAGGTCTCCCAGGCCCTCCAAGGCCTGCTTGTTTTGGGATAGTTTAGGA
CircID chr5:140676849|140677084
ORF Type ORF2
Protein Length 45
Nucleotide Length 138
Protein Sequence MEGLGDLKLLFEYLTLFGIDDKVSQVGDGIPSELWGFRSLILIWH
Nucleotide Sequence TTGGAGGGCCTGGGAGACCTGAAGTTGCTCTTTGAGTACCTGACCCTATTTGGCATTGATGACAAAGTGAGTCAAGTTGGGGACGGGATCCCTTCTGAGCTCTGGGGCTTCAGGTCCCTGATCTTAATCTGGCACTGA
CircID chr5:140676849|140677084
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MGLQVPDLNLALTIFLSPQISFDLSLARGLDYYTG
Nucleotide Sequence CTGGGGCTTCAGGTCCCTGATCTTAATCTGGCACTGACCATTTTCTTATCTCCACAGATCTCCTTTGACCTGAGCCTTGCTCGAGGGCTGGATTACTACACTGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab