CircRNA Information

General Information
circRNA Basic Information
CircID chr5:140677010|140677368
Strand +
CircType exon
Host Gene ENSG00000170445.11;
Algorism CIRI2;
Sequence CTGAGGTGGCTGACCGCATTGGGGACTATGTCCAGCAACATGGTGAGGAACAGAACCAAGCCTCCCCAGCAGCCGTCCCACTGCCCTCAGTCCTAAAGTTGAAACTGTTCTGTGTTATGTATGTAGGGGAGTGAGTGTGTCTATGCATATGTACACACACATGCATGGGCGACTAGAGTCCAGGCAAGAAGGTCAACCCTCCTTACCTTTTTTGTTTCCTTGTCAGCCTCACTCACAAGTCTGTCTCCCCAGGTGGGGTATCCCTGGTGGAACAGCTGCTCCAGGATCCTAAACTATCCCAAAACAAGCAGGCCTTGGAGGGCCTGGGAGACCTGAAGTTGCTCTTTGAGTACCTGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:140677010|140677368 hsa-miR-192-5p 0 0 1
chr5:140677010|140677368 hsa-miR-192-3p 0 0 1
chr5:140677010|140677368 hsa-miR-34a-5p 0 0 1
chr5:140677010|140677368 hsa-miR-34a-3p 0 0 1
chr5:140677010|140677368 hsa-miR-215-5p 0 0 1
chr5:140677010|140677368 hsa-miR-215-3p 0 0 1
chr5:140677010|140677368 hsa-miR-150-5p 0 0 1
chr5:140677010|140677368 hsa-miR-150-3p 0 0 1
chr5:140677010|140677368 hsa-miR-422a 0 0 1
chr5:140677010|140677368 hsa-miR-449a 0 1 1
chr5:140677010|140677368 hsa-miR-554 0 0 1
chr5:140677010|140677368 hsa-miR-563 0 0 1
chr5:140677010|140677368 hsa-miR-586 0 0 1
chr5:140677010|140677368 hsa-miR-603 0 0 1
chr5:140677010|140677368 hsa-miR-646 0 0 1
chr5:140677010|140677368 hsa-miR-651-5p 0 0 1
chr5:140677010|140677368 hsa-miR-651-3p 0 0 1
chr5:140677010|140677368 hsa-miR-661 0 0 1
chr5:140677010|140677368 hsa-miR-449b-5p 0 0 1
chr5:140677010|140677368 hsa-miR-449b-3p 0 0 1
chr5:140677010|140677368 hsa-miR-659-5p 0 0 1
chr5:140677010|140677368 hsa-miR-659-3p 0 0 1
chr5:140677010|140677368 hsa-miR-891b 0 0 1
chr5:140677010|140677368 hsa-miR-888-5p 0 0 1
chr5:140677010|140677368 hsa-miR-888-3p 0 0 1
chr5:140677010|140677368 hsa-miR-939-5p 0 0 1
chr5:140677010|140677368 hsa-miR-939-3p 0 0 1
chr5:140677010|140677368 hsa-miR-1287-5p 0 0 1
chr5:140677010|140677368 hsa-miR-1287-3p 0 0 1
chr5:140677010|140677368 hsa-miR-1305 0 0 1
chr5:140677010|140677368 hsa-miR-1248 0 1 1
chr5:140677010|140677368 hsa-miR-548m 0 0 1
chr5:140677010|140677368 hsa-miR-1276 0 0 1
chr5:140677010|140677368 hsa-miR-532-3p 0 0 1
chr5:140677010|140677368 hsa-miR-296-3p 0 0 1
chr5:140677010|140677368 hsa-miR-485-5p 0 0 1
chr5:140677010|140677368 hsa-miR-1224-3p 0 0 1
chr5:140677010|140677368 hsa-miR-769-3p 1 0 1
chr5:140677010|140677368 hsa-miR-483-3p 0 0 1
chr5:140677010|140677368 hsa-miR-34c-5p 0 1 1
chr5:140677010|140677368 hsa-miR-450b-3p 0 0 1
chr5:140677010|140677368 hsa-miR-378 0 0 1
chr5:140677010|140677368 hsa-miR-153 0 0 1
chr5:140677010|140677368 hsa-miR-1254 0 0 1
chr5:140677010|140677368 hsa-miR-764 1 0 0
chr5:140677010|140677368 hsa-miR-297 0 1 0
chr5:140677010|140677368 hsa-miR-1294 1 0 0
chr5:140677010|140677368 hsa-miR-4298 1 0 0
chr5:140677010|140677368 hsa-miR-4316 0 1 0
chr5:140677010|140677368 hsa-miR-4254 1 1 0
chr5:140677010|140677368 hsa-miR-3929 0 1 0
chr5:140677010|140677368 hsa-miR-378h 0 1 0
chr5:140677010|140677368 hsa-miR-4496 0 1 0
chr5:140677010|140677368 hsa-miR-3960 1 0 0
chr5:140677010|140677368 hsa-miR-4648 0 1 0
chr5:140677010|140677368 hsa-miR-4656 1 1 0
chr5:140677010|140677368 hsa-miR-4688 1 0 0
chr5:140677010|140677368 hsa-miR-4741 1 0 0
chr5:140677010|140677368 hsa-miR-6081 1 1 0
chr5:140677010|140677368 hsa-miR-6085 1 0 0
chr5:140677010|140677368 hsa-miR-6086 1 0 0
chr5:140677010|140677368 hsa-miR-6860 1 0 0
chr5:140677010|140677368 hsa-miR-8070 1 0 0
chr5:140677010|140677368 hsa-miR-8085 1 0 0
chr5:140677010|140677368 hsa-miR-8089 1 1 0
chr5:140677010|140677368 hsa-miR-12115 1 0 0
chr5:140677010|140677368 hsa-miR-12119 1 0 0
chr5:140677010|140677368 hsa-miR-12126 0 1 0
chr5:140677010|140677368 hsa-miR-370-3p 1 0 0
chr5:140677010|140677368 hsa-miR-152-5p 0 1 0
chr5:140677010|140677368 hsa-miR-6809-5p 0 1 0
chr5:140677010|140677368 hsa-miR-6765-5p 1 0 0
chr5:140677010|140677368 hsa-miR-3150a-3p 1 1 0
chr5:140677010|140677368 hsa-miR-6825-5p 1 1 0
chr5:140677010|140677368 hsa-miR-4687-3p 1 1 0
chr5:140677010|140677368 hsa-miR-6728-5p 1 0 0
chr5:140677010|140677368 hsa-miR-3692-5p 1 1 0
chr5:140677010|140677368 hsa-miR-1236-5p 1 0 0
chr5:140677010|140677368 hsa-miR-7851-3p 1 1 0
chr5:140677010|140677368 hsa-miR-6089 1 0 0
chr5:140677010|140677368 hsa-miR-6757-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6867-5p 0 1 0
chr5:140677010|140677368 hsa-miR-6730-5p 0 1 0
chr5:140677010|140677368 hsa-miR-6727-5p 1 0 0
chr5:140677010|140677368 hsa-miR-3180-3p 1 0 0
chr5:140677010|140677368 hsa-miR-6748-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6796-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6829-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4713-5p 0 1 0
chr5:140677010|140677368 hsa-miR-1226-5p 1 1 0
chr5:140677010|140677368 hsa-miR-6749-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4733-3p 0 1 0
chr5:140677010|140677368 hsa-miR-6824-5p 1 0 0
chr5:140677010|140677368 hsa-miR-194-3p 0 1 0
chr5:140677010|140677368 hsa-miR-4661-3p 0 1 0
chr5:140677010|140677368 hsa-miR-1304-5p 1 0 0
chr5:140677010|140677368 hsa-miR-7113-5p 0 1 0
chr5:140677010|140677368 hsa-miR-5088-3p 0 1 0
chr5:140677010|140677368 hsa-miR-5089-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4524a-3p 0 1 0
chr5:140677010|140677368 hsa-miR-541-5p 1 0 0
chr5:140677010|140677368 hsa-miR-3177-5p 0 1 0
chr5:140677010|140677368 hsa-miR-499b-5p 0 1 0
chr5:140677010|140677368 hsa-miR-4763-3p 1 0 0
chr5:140677010|140677368 hsa-miR-6769b-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6870-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6803-5p 1 0 0
chr5:140677010|140677368 hsa-miR-7107-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6751-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6763-5p 1 1 0
chr5:140677010|140677368 hsa-miR-6879-5p 0 1 0
chr5:140677010|140677368 hsa-miR-7111-5p 1 0 0
chr5:140677010|140677368 hsa-miR-3620-5p 1 0 0
chr5:140677010|140677368 hsa-miR-328-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4632-5p 0 1 0
chr5:140677010|140677368 hsa-miR-4685-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4745-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6735-5p 1 1 0
chr5:140677010|140677368 hsa-miR-6795-5p 1 1 0
chr5:140677010|140677368 hsa-miR-6846-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6858-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6887-5p 1 1 0
chr5:140677010|140677368 hsa-miR-4758-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6511a-5p 1 1 0
chr5:140677010|140677368 hsa-miR-3116 0 1 0
chr5:140677010|140677368 hsa-miR-4700-5p 0 1 0
chr5:140677010|140677368 hsa-miR-4747-5p 0 1 0
chr5:140677010|140677368 hsa-miR-6750-5p 1 0 0
chr5:140677010|140677368 hsa-miR-4667-5p 1 1 0
chr5:140677010|140677368 hsa-miR-6790-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6791-5p 1 0 0
chr5:140677010|140677368 hsa-miR-10401-3p 1 0 0
chr5:140677010|140677368 hsa-miR-4756-5p 1 0 0
chr5:140677010|140677368 hsa-miR-6884-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:140677010|140677368
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LRWLTALGTMSSNMVRNRTKPPQQPSHCPQS
Nucleotide Sequence CTGAGGTGGCTGACCGCATTGGGGACTATGTCCAGCAACATGGTGAGGAACAGAACCAAGCCTCCCCAGCAGCCGTCCCACTGCCCTCAGTCCTAA
CircID chr5:140677010|140677368
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MSASLTSLSPQVGYPWWNSCSRILNYPKTSRPWRAWET
Nucleotide Sequence TTGTCAGCCTCACTCACAAGTCTGTCTCCCCAGGTGGGGTATCCCTGGTGGAACAGCTGCTCCAGGATCCTAAACTATCCCAAAACAAGCAGGCCTTGGAGGGCCTGGGAGACCTGA
CircID chr5:140677010|140677368
ORF Type ORF3
Protein Length 60
Nucleotide Length 183
Protein Sequence MCYVCRGVSVSMHMYTHMHGRLESRQEGQPSLPFLFPCQPHSQVCLPRWGIPGGTAAPGS
Nucleotide Sequence CTGTGTTATGTATGTAGGGGAGTGAGTGTGTCTATGCATATGTACACACACATGCATGGGCGACTAGAGTCCAGGCAAGAAGGTCAACCCTCCTTACCTTTTTTGTTTCCTTGTCAGCCTCACTCACAAGTCTGTCTCCCCAGGTGGGGTATCCCTGGTGGAACAGCTGCTCCAGGATCCTAA
CircID chr5:140677010|140677368
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MVEQLLQDPKLSQNKQALEGLGDLKLLFEYLT
Nucleotide Sequence CTGGTGGAACAGCTGCTCCAGGATCCTAAACTATCCCAAAACAAGCAGGCCTTGGAGGGCCTGGGAGACCTGAAGTTGCTCTTTGAGTACCTGACC
CircID chr5:140677010|140677368
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MEQLFHQGYPTWGDRLVSEADKETKKVRRVDLLAWTLVAHACVCTYA
Nucleotide Sequence CTGGAGCAGCTGTTCCACCAGGGATACCCCACCTGGGGAGACAGACTTGTGAGTGAGGCTGACAAGGAAACAAAAAAGGTAAGGAGGGTTGACCTTCTTGCCTGGACTCTAGTCGCCCATGCATGTGTGTGTACATATGCATAG
CircID chr5:140677010|140677368
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MHVCVHMHRHTHSPTYITQNSFNFRTEGSGTAAGEAWFCSSPCCWT
Nucleotide Sequence ATGCATGTGTGTGTACATATGCATAGACACACTCACTCCCCTACATACATAACACAGAACAGTTTCAACTTTAGGACTGAGGGCAGTGGGACGGCTGCTGGGGAGGCTTGGTTCTGTTCCTCACCATGTTGCTGGACATAG
CircID chr5:140677010|140677368
ORF Type ORF7
Protein Length 30
Nucleotide Length 90
Protein Sequence MRAVGRLLGRLGSVPHHVAGHSPQCGQPPQ
Nucleotide Sequence CTGAGGGCAGTGGGACGGCTGCTGGGGAGGCTTGGTTCTGTTCCTCACCATGTTGCTGGACATAGTCCCCAATGCGGTCAGCCACCTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab