CircRNA Information

General Information
circRNA Basic Information
CircID chr5:141179258|141179398
Strand -
CircType exon
Host Gene ENSG00000120322.3;
Algorism CIRI2;
Sequence ACCACTAGACAGAGAAAGCAGAGCCGAGTACAACGTCACTATCACCGTCACTGACTTAGGGACACCCAGGCTGACAACACATCTCAATATGACCGTGCTGGTGTCGGACGTCAATGACAACGCCCCCGCCTTCACCCAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:141179258|141179398 hsa-miR-224-5p 0 0 1
chr5:141179258|141179398 hsa-miR-224-3p 0 0 1
chr5:141179258|141179398 hsa-miR-143-5p 0 0 1
chr5:141179258|141179398 hsa-miR-143-3p 0 0 1
chr5:141179258|141179398 hsa-miR-609 0 0 1
chr5:141179258|141179398 hsa-miR-616-5p 0 0 1
chr5:141179258|141179398 hsa-miR-616-3p 0 0 1
chr5:141179258|141179398 hsa-miR-634 0 0 1
chr5:141179258|141179398 hsa-miR-661 0 1 1
chr5:141179258|141179398 hsa-miR-760 1 0 1
chr5:141179258|141179398 hsa-miR-1226-5p 0 0 1
chr5:141179258|141179398 hsa-miR-1226-3p 0 0 1
chr5:141179258|141179398 hsa-miR-1262 0 0 1
chr5:141179258|141179398 hsa-miR-1279 0 0 1
chr5:141179258|141179398 hsa-miR-140-5p 0 0 1
chr5:141179258|141179398 hsa-miR-576-3p 0 0 1
chr5:141179258|141179398 hsa-miR-663 0 0 1
chr5:141179258|141179398 hsa-miR-564 1 0 0
chr5:141179258|141179398 hsa-miR-663a 1 0 0
chr5:141179258|141179398 hsa-miR-762 1 0 0
chr5:141179258|141179398 hsa-miR-2113 1 0 0
chr5:141179258|141179398 hsa-miR-3657 0 1 0
chr5:141179258|141179398 hsa-miR-4447 1 0 0
chr5:141179258|141179398 hsa-miR-4488 1 0 0
chr5:141179258|141179398 hsa-miR-4710 1 0 0
chr5:141179258|141179398 hsa-miR-5787 1 0 0
chr5:141179258|141179398 hsa-miR-11400 1 0 0
chr5:141179258|141179398 hsa-miR-12114 1 0 0
chr5:141179258|141179398 hsa-miR-128-1-5p 1 0 0
chr5:141179258|141179398 hsa-miR-3194-3p 1 1 0
chr5:141179258|141179398 hsa-miR-6765-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6822-3p 1 0 0
chr5:141179258|141179398 hsa-miR-3622a-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6089 1 0 0
chr5:141179258|141179398 hsa-miR-6880-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6741-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6776-5p 0 1 0
chr5:141179258|141179398 hsa-miR-6772-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6728-3p 1 0 0
chr5:141179258|141179398 hsa-miR-6786-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6740-5p 0 1 0
chr5:141179258|141179398 hsa-miR-1908-5p 1 1 0
chr5:141179258|141179398 hsa-miR-1228-5p 1 0 0
chr5:141179258|141179398 hsa-miR-4787-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6789-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6742-3p 0 1 0
chr5:141179258|141179398 hsa-miR-493-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6741-3p 1 1 0
chr5:141179258|141179398 hsa-miR-598-5p 0 1 0
chr5:141179258|141179398 hsa-miR-6755-3p 0 1 0
chr5:141179258|141179398 hsa-miR-3613-5p 0 1 0
chr5:141179258|141179398 hsa-miR-10400-5p 1 0 0
chr5:141179258|141179398 hsa-miR-4763-3p 1 0 0
chr5:141179258|141179398 hsa-miR-6787-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6812-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6752-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6842-5p 1 0 0
chr5:141179258|141179398 hsa-miR-10396b-5p 1 0 0
chr5:141179258|141179398 hsa-miR-1237-5p 1 0 0
chr5:141179258|141179398 hsa-miR-4649-5p 1 0 0
chr5:141179258|141179398 hsa-miR-4701-3p 1 1 0
chr5:141179258|141179398 hsa-miR-6729-5p 1 0 0
chr5:141179258|141179398 hsa-miR-6848-5p 1 0 0
chr5:141179258|141179398 hsa-miR-4697-5p 1 1 0
chr5:141179258|141179398 hsa-miR-6736-5p 1 1 0
chr5:141179258|141179398 hsa-miR-9851-3p 1 0 0
chr5:141179258|141179398 hsa-miR-6874-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:141179258|141179398
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MSLTSDTSTVILRCVVSLGVPKSVTVIVTLYSALLSLSSG
Nucleotide Sequence TTGTCATTGACGTCCGACACCAGCACGGTCATATTGAGATGTGTTGTCAGCCTGGGTGTCCCTAAGTCAGTGACGGTGATAGTGACGTTGTACTCGGCTCTGCTTTCTCTGTCTAGTGGT
CircID chr5:141179258|141179398
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence LGEGGGVVIDVRHQHGHIEMCCQPGCP
Nucleotide Sequence TTGGGTGAAGGCGGGGGCGTTGTCATTGACGTCCGACACCAGCACGGTCATATTGAGATGTGTTGTCAGCCTGGGTGTCCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab