CircRNA Information

General Information
circRNA Basic Information
CircID chr5:141511965|141512219
Strand +
CircType exon
Host Gene ENSG00000204956.5;
Algorism CIRI2;
Sequence CTGGTCCTAAACCTGCTTCGAGCTTCCTTGGACTGAAATGCCAGTTTAATCCATTGGTCCTGTTAGCTCAGCCCAAAGCTGGCTGCCTGGGCTGAGCCCTATTATGTAGTGGGAAGGGTCCAGCCTAGTTATTGGTTTATGGCTGGAATCTGGAGGATGTTGTCAGTCCCCTGAGGACATACAGAGCCTCCTCCAAGGCCTTGATAACTTGATGTGTCAAGCTTTGTCCATGCCCCCACCATCCACATCCACACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:141511965|141512219 hsa-miR-432-5p 0 0 1
chr5:141511965|141512219 hsa-miR-432-3p 0 0 1
chr5:141511965|141512219 hsa-miR-567 0 0 1
chr5:141511965|141512219 hsa-miR-610 0 0 1
chr5:141511965|141512219 hsa-miR-645 0 0 1
chr5:141511965|141512219 hsa-miR-651-5p 0 0 1
chr5:141511965|141512219 hsa-miR-651-3p 0 0 1
chr5:141511965|141512219 hsa-miR-657 0 0 1
chr5:141511965|141512219 hsa-miR-765 0 0 1
chr5:141511965|141512219 hsa-miR-541-5p 0 0 1
chr5:141511965|141512219 hsa-miR-541-3p 0 0 1
chr5:141511965|141512219 hsa-miR-760 1 0 1
chr5:141511965|141512219 hsa-miR-297 0 0 1
chr5:141511965|141512219 hsa-miR-1246 0 0 1
chr5:141511965|141512219 hsa-miR-1256 0 0 1
chr5:141511965|141512219 hsa-miR-548g-5p 0 0 1
chr5:141511965|141512219 hsa-miR-548g-3p 0 0 1
chr5:141511965|141512219 hsa-miR-1266-5p 0 0 1
chr5:141511965|141512219 hsa-miR-1266-3p 0 0 1
chr5:141511965|141512219 hsa-miR-654-5p 0 0 1
chr5:141511965|141512219 hsa-miR-188-3p 0 0 1
chr5:141511965|141512219 hsa-miR-455-3p 0 0 1
chr5:141511965|141512219 hsa-miR-1260 0 0 1
chr5:141511965|141512219 hsa-miR-644 0 0 1
chr5:141511965|141512219 hsa-miR-514 0 0 1
chr5:141511965|141512219 hsa-miR-24 0 0 1
chr5:141511965|141512219 hsa-miR-768-5p 0 0 1
chr5:141511965|141512219 hsa-miR-147 0 0 1
chr5:141511965|141512219 hsa-miR-549 0 0 1
chr5:141511965|141512219 hsa-miR-608 1 0 0
chr5:141511965|141512219 hsa-miR-637 1 0 0
chr5:141511965|141512219 hsa-miR-663a 1 0 0
chr5:141511965|141512219 hsa-miR-762 1 0 0
chr5:141511965|141512219 hsa-miR-1265 1 0 0
chr5:141511965|141512219 hsa-miR-1268a 1 0 0
chr5:141511965|141512219 hsa-miR-3911 1 0 0
chr5:141511965|141512219 hsa-miR-1268b 1 0 0
chr5:141511965|141512219 hsa-miR-4449 1 0 0
chr5:141511965|141512219 hsa-miR-4488 1 0 0
chr5:141511965|141512219 hsa-miR-4498 1 0 0
chr5:141511965|141512219 hsa-miR-4505 1 0 0
chr5:141511965|141512219 hsa-miR-4507 1 0 0
chr5:141511965|141512219 hsa-miR-1587 1 0 0
chr5:141511965|141512219 hsa-miR-4656 1 0 0
chr5:141511965|141512219 hsa-miR-4658 1 0 0
chr5:141511965|141512219 hsa-miR-8060 1 0 0
chr5:141511965|141512219 hsa-miR-6747-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6833-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6867-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6759-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6748-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6881-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6786-5p 1 0 0
chr5:141511965|141512219 hsa-miR-1226-5p 1 0 0
chr5:141511965|141512219 hsa-miR-3691-5p 1 0 0
chr5:141511965|141512219 hsa-miR-4764-5p 1 0 0
chr5:141511965|141512219 hsa-miR-5010-5p 1 0 0
chr5:141511965|141512219 hsa-miR-1207-5p 1 0 0
chr5:141511965|141512219 hsa-miR-1233-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6769b-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6787-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6775-5p 1 0 0
chr5:141511965|141512219 hsa-miR-5001-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6726-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6752-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6756-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6769a-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6803-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6851-5p 1 0 0
chr5:141511965|141512219 hsa-miR-7110-5p 1 0 0
chr5:141511965|141512219 hsa-miR-10401-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6751-5p 1 0 0
chr5:141511965|141512219 hsa-miR-3620-5p 1 0 0
chr5:141511965|141512219 hsa-miR-1237-5p 1 0 0
chr5:141511965|141512219 hsa-miR-328-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6846-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6848-5p 1 0 0
chr5:141511965|141512219 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:141511965|141512219
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MAAWAEPYYVVGRVQPSYWFMAGIWRMLSVP
Nucleotide Sequence CTGGCTGCCTGGGCTGAGCCCTATTATGTAGTGGGAAGGGTCCAGCCTAGTTATTGGTTTATGGCTGGAATCTGGAGGATGTTGTCAGTCCCCTGA
CircID chr5:141511965|141512219
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MESGGCCQSPEDIQSLLQGLDNLMCQALSMPPPSTST
Nucleotide Sequence CTGGAATCTGGAGGATGTTGTCAGTCCCCTGAGGACATACAGAGCCTCCTCCAAGGCCTTGATAACTTGATGTGTCAAGCTTTGTCCATGCCCCCACCATCCACATCCACA
CircID chr5:141511965|141512219
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MVYGWNLEDVVSPLRTYRASSKALIT
Nucleotide Sequence TTGGTTTATGGCTGGAATCTGGAGGATGTTGTCAGTCCCCTGAGGACATACAGAGCCTCCTCCAAGGCCTTGATAACTTGA
CircID chr5:141511965|141512219
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MDPSHYIIGLSPGSQLWAELTGPMD
Nucleotide Sequence CTGGACCCTTCCCACTACATAATAGGGCTCAGCCCAGGCAGCCAGCTTTGGGCTGAGCTAACAGGACCAATGGATTAA
CircID chr5:141511965|141512219
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MWMVGAWTKLDTSSYQGLGGGSVCPQGTDNILQIPAINQ
Nucleotide Sequence ATGTGGATGGTGGGGGCATGGACAAAGCTTGACACATCAAGTTATCAAGGCCTTGGAGGAGGCTCTGTATGTCCTCAGGGGACTGACAACATCCTCCAGATTCCAGCCATAAACCAATAA
CircID chr5:141511965|141512219
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MTHQVIKALEEALYVLRGLTTSSRFQP
Nucleotide Sequence TTGACACATCAAGTTATCAAGGCCTTGGAGGAGGCTCTGTATGTCCTCAGGGGACTGACAACATCCTCCAGATTCCAGCCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab