CircRNA Information

General Information
circRNA Basic Information
CircID chr5:141955008|141955218
Strand -
CircType exon
Host Gene ENSG00000113555.5;
Algorism CIRI2;
Sequence GGGGTTCCGCTCGGCGAAGGCAGCCACAGACAGCCGGACCAGGCTCCGCAGGATCTGACGGGGCCCTGATTCTTTCTCAGGGGACACTTTGCCATTGAGATGTCGCTGCCGTCTCAGGGTTGCAGAGGAGGCTGGTGGCCTCTGTGGGGCTTCCTCACTGCCCTGGTCTCCAGCCAGCCTCCCTGTGGGGCTGCCTGCAACCTTCAGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:141955008|141955218 hsa-miR-34a-5p 0 0 1
chr5:141955008|141955218 hsa-miR-34a-3p 0 0 1
chr5:141955008|141955218 hsa-miR-186-5p 0 0 1
chr5:141955008|141955218 hsa-miR-186-3p 0 0 1
chr5:141955008|141955218 hsa-miR-449a 0 0 1
chr5:141955008|141955218 hsa-miR-493-5p 0 0 1
chr5:141955008|141955218 hsa-miR-493-3p 0 0 1
chr5:141955008|141955218 hsa-miR-520g-5p 0 0 1
chr5:141955008|141955218 hsa-miR-520g-3p 0 0 1
chr5:141955008|141955218 hsa-miR-520h 0 0 1
chr5:141955008|141955218 hsa-miR-539-5p 0 0 1
chr5:141955008|141955218 hsa-miR-539-3p 0 0 1
chr5:141955008|141955218 hsa-miR-604 0 0 1
chr5:141955008|141955218 hsa-miR-626 0 0 1
chr5:141955008|141955218 hsa-miR-647 0 0 1
chr5:141955008|141955218 hsa-miR-449b-5p 0 0 1
chr5:141955008|141955218 hsa-miR-449b-3p 0 0 1
chr5:141955008|141955218 hsa-miR-658 0 0 1
chr5:141955008|141955218 hsa-miR-1226-5p 0 0 1
chr5:141955008|141955218 hsa-miR-1226-3p 0 0 1
chr5:141955008|141955218 hsa-miR-1321 0 0 1
chr5:141955008|141955218 hsa-miR-671-5p 1 0 1
chr5:141955008|141955218 hsa-miR-139-3p 0 0 1
chr5:141955008|141955218 hsa-miR-296-5p 0 0 1
chr5:141955008|141955218 hsa-miR-885-3p 0 0 1
chr5:141955008|141955218 hsa-miR-485-5p 0 0 1
chr5:141955008|141955218 hsa-miR-331-3p 0 0 1
chr5:141955008|141955218 hsa-miR-125a-5p 0 0 1
chr5:141955008|141955218 hsa-miR-34c-5p 0 0 1
chr5:141955008|141955218 hsa-miR-125b 0 0 1
chr5:141955008|141955218 hsa-miR-220c 0 0 1
chr5:141955008|141955218 hsa-miR-663a 1 0 0
chr5:141955008|141955218 hsa-miR-3132 1 0 0
chr5:141955008|141955218 hsa-miR-10400-5p 1 0 0
chr5:141955008|141955218 hsa-miR-1207-5p 1 0 0
chr5:141955008|141955218 hsa-miR-6775-5p 1 0 0
chr5:141955008|141955218 hsa-miR-6754-5p 1 0 0
chr5:141955008|141955218 hsa-miR-328-5p 1 0 0
chr5:141955008|141955218 hsa-miR-7843-5p 1 0 0
chr5:141955008|141955218 hsa-miR-323b-5p 1 0 0
chr5:141955008|141955218 hsa-miR-6876-3p 1 0 0
chr5:141955008|141955218 hsa-miR-494-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:141955008|141955218
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MSLPSQGCRGGWWPLWGFLTALVSSQPPCGAACNLQR
Nucleotide Sequence ATGTCGCTGCCGTCTCAGGGTTGCAGAGGAGGCTGGTGGCCTCTGTGGGGCTTCCTCACTGCCCTGGTCTCCAGCCAGCCTCCCTGTGGGGCTGCCTGCAACCTTCAGAGG
CircID chr5:141955008|141955218
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MPLRCRCRLRVAEEAGGLCGASSLPWSPASLPVGLPATFRG
Nucleotide Sequence TTGCCATTGAGATGTCGCTGCCGTCTCAGGGTTGCAGAGGAGGCTGGTGGCCTCTGTGGGGCTTCCTCACTGCCCTGGTCTCCAGCCAGCCTCCCTGTGGGGCTGCCTGCAACCTTCAGAGGC
CircID chr5:141955008|141955218
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MQRRLVASVGLPHCPGLQPASLWGCLQPSE
Nucleotide Sequence TTGCAGAGGAGGCTGGTGGCCTCTGTGGGGCTTCCTCACTGCCCTGGTCTCCAGCCAGCCTCCCTGTGGGGCTGCCTGCAACCTTCAGAG
CircID chr5:141955008|141955218
ORF Type ORF4
Protein Length 69
Nucleotide Length 207
Protein Sequence MKVAGSPTGRLAGDQGSEEAPQRPPASSATLRRQRHLNGKVSPEKESGPRQILRSLVRLSVAAFAERNP
Nucleotide Sequence CTGAAGGTTGCAGGCAGCCCCACAGGGAGGCTGGCTGGAGACCAGGGCAGTGAGGAAGCCCCACAGAGGCCACCAGCCTCCTCTGCAACCCTGAGACGGCAGCGACATCTCAATGGCAAAGTGTCCCCTGAGAAAGAATCAGGGCCCCGTCAGATCCTGCGGAGCCTGGTCCGGCTGTCTGTGGCTGCCTTCGCCGAGCGGAACCCC
CircID chr5:141955008|141955218
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MQAAPQGGWLETRAVRKPHRGHQPPLQP
Nucleotide Sequence TTGCAGGCAGCCCCACAGGGAGGCTGGCTGGAGACCAGGGCAGTGAGGAAGCCCCACAGAGGCCACCAGCCTCCTCTGCAACCCTGA
CircID chr5:141955008|141955218
ORF Type ORF6
Protein Length 31
Nucleotide Length 93
Protein Sequence MAKCPLRKNQGPVRSCGAWSGCLWLPSPSGT
Nucleotide Sequence ATGGCAAAGTGTCCCCTGAGAAAGAATCAGGGCCCCGTCAGATCCTGCGGAGCCTGGTCCGGCTGTCTGTGGCTGCCTTCGCCGAGCGGAACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab