CircRNA Information

General Information
circRNA Basic Information
CircID chr5:143054439|143057747
Strand +
CircType exon
Host Gene ENSG00000145819.15;
Algorism find_circ;CIRI2;DCC;
Sequence ACCCCAAGACTGCTTCTGAGACAGAAACAGATATCTGTGCTGAATGGGAGATAAAGACCATCACTAGTGCTCTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:143054439|143057747 hsa-miR-15a-5p 0 0 1
chr5:143054439|143057747 hsa-miR-15a-3p 0 0 1
chr5:143054439|143057747 hsa-miR-182-5p 0 0 1
chr5:143054439|143057747 hsa-miR-182-3p 0 0 1
chr5:143054439|143057747 hsa-miR-15b-5p 0 0 1
chr5:143054439|143057747 hsa-miR-15b-3p 0 0 1
chr5:143054439|143057747 hsa-miR-195-5p 0 0 1
chr5:143054439|143057747 hsa-miR-195-3p 0 0 1
chr5:143054439|143057747 hsa-miR-424-5p 0 0 1
chr5:143054439|143057747 hsa-miR-424-3p 0 0 1
chr5:143054439|143057747 hsa-miR-433-5p 0 0 1
chr5:143054439|143057747 hsa-miR-433-3p 0 0 1
chr5:143054439|143057747 hsa-miR-497-5p 0 0 1
chr5:143054439|143057747 hsa-miR-497-3p 0 0 1
chr5:143054439|143057747 hsa-miR-520f-5p 0 0 1
chr5:143054439|143057747 hsa-miR-520f-3p 0 0 1
chr5:143054439|143057747 hsa-miR-545-5p 0 0 1
chr5:143054439|143057747 hsa-miR-545-3p 0 0 1
chr5:143054439|143057747 hsa-miR-577 0 0 1
chr5:143054439|143057747 hsa-miR-589-5p 0 0 1
chr5:143054439|143057747 hsa-miR-589-3p 0 0 1
chr5:143054439|143057747 hsa-miR-593-5p 0 0 1
chr5:143054439|143057747 hsa-miR-593-3p 0 0 1
chr5:143054439|143057747 hsa-miR-607 0 0 1
chr5:143054439|143057747 hsa-miR-1323 0 0 1
chr5:143054439|143057747 hsa-miR-665 0 1 1
chr5:143054439|143057747 hsa-miR-1206 0 0 1
chr5:143054439|143057747 hsa-miR-548e-5p 0 0 1
chr5:143054439|143057747 hsa-miR-548e-3p 0 0 1
chr5:143054439|143057747 hsa-miR-548o-3p 0 0 1
chr5:143054439|143057747 hsa-miR-548p 0 0 1
chr5:143054439|143057747 hsa-miR-548o 0 0 1
chr5:143054439|143057747 hsa-miR-203a-5p 0 1 1
chr5:143054439|143057747 hsa-miR-512-3p 0 0 1
chr5:143054439|143057747 hsa-miR-330-3p 0 1 1
chr5:143054439|143057747 hsa-miR-767-3p 0 1 1
chr5:143054439|143057747 hsa-miR-34c-3p 0 0 1
chr5:143054439|143057747 hsa-miR-548a-3p 0 0 1
chr5:143054439|143057747 hsa-miR-516a-3p 0 0 1
chr5:143054439|143057747 hsa-miR-548b-3p 0 0 1
chr5:143054439|143057747 hsa-miR-548c-3p 0 0 1
chr5:143054439|143057747 hsa-miR-16 0 0 1
chr5:143054439|143057747 hsa-miR-548f 0 0 1
chr5:143054439|143057747 hsa-miR-611 1 0 0
chr5:143054439|143057747 hsa-miR-1245a 1 1 0
chr5:143054439|143057747 hsa-miR-4312 0 1 0
chr5:143054439|143057747 hsa-miR-3921 1 1 0
chr5:143054439|143057747 hsa-miR-4473 0 1 0
chr5:143054439|143057747 hsa-miR-5705 1 0 0
chr5:143054439|143057747 hsa-miR-8077 1 0 0
chr5:143054439|143057747 hsa-miR-8089 1 1 0
chr5:143054439|143057747 hsa-miR-146a-3p 0 1 0
chr5:143054439|143057747 hsa-miR-1301-3p 0 1 0
chr5:143054439|143057747 hsa-miR-4738-3p 1 0 0
chr5:143054439|143057747 hsa-miR-30c-2-3p 0 1 0
chr5:143054439|143057747 hsa-miR-2115-5p 1 1 0
chr5:143054439|143057747 hsa-miR-582-5p 0 1 0
chr5:143054439|143057747 hsa-miR-6502-3p 0 1 0
chr5:143054439|143057747 hsa-miR-548ao-3p 0 1 0
chr5:143054439|143057747 hsa-miR-1273h-5p 0 1 0
chr5:143054439|143057747 hsa-miR-6780a-5p 1 0 0
chr5:143054439|143057747 hsa-miR-1915-3p 1 0 0
chr5:143054439|143057747 hsa-miR-6889-5p 1 0 0
chr5:143054439|143057747 hsa-miR-4758-5p 1 0 0
chr5:143054439|143057747 hsa-miR-6856-5p 1 0 0
chr5:143054439|143057747 hsa-miR-10398-3p 1 0 0
chr5:143054439|143057747 hsa-miR-10400-3p 1 0 0
chr5:143054439|143057747 hsa-miR-375-3p 0 1 0
chr5:143054439|143057747 hsa-miR-7157-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:143054439|143057747
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLQLLMNHLA
Nucleotide Sequence ATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCA
CircID chr5:143054439|143057747
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MNKAVDFRDPRLLVLQFCCFDETSLKLVHHEWSWKHS*
Nucleotide Sequence ATGAACAAGGCTGTGGATTTCAGAGACCCGAGACTCCTGGTTCTCCAGTTTTGCTGCTTTGATGAAACTTCTTTGAAACTGGTACATCATGAGTGGTCCTGGAAGCATTCTTAG
CircID chr5:143054439|143057747
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MPIFLWEPMNKAVDFRDPRLLVLQFLGRSSEH
Nucleotide Sequence CTGCCGATTTTTCTCTGGGAGCCGATGAACAAGGCTGTGGATTTCAGAGACCCGAGACTCCTGGTTCTCCAGTTCTTAGGTAGGTCTTCAGAGCACTAG
CircID chr5:143054439|143057747
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MENQESRVSEIHSLVHRLPEKNRQMLQLLMNHLA
Nucleotide Sequence CTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCA
CircID chr5:143054439|143057747
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MPIFLWEPMNKAVDFRDPRLLVLQFCCFDETSLKLVHHEWSWKHS
Nucleotide Sequence CTGCCGATTTTTCTCTGGGAGCCGATGAACAAGGCTGTGGATTTCAGAGACCCGAGACTCCTGGTTCTCCAGTTTTGCTGCTTTGATGAAACTTCTTTGAAACTGGTACATCATGAGTGGTCCTGGAAGCATTCTTAG
CircID chr5:143054439|143057747
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLVHRLPEKNRQMLQLLMNHLA
Nucleotide Sequence CTGAAGACCTACCTAAGAATGCTTCCAGGACCACTCATGATGTACCAGTTTCAAAGAAGTTTCATCAAAGCAGCAAAACTGGAGAACCAGGAGTCTCGGGTCTCTGAAATCCACAGCCTTGTTCATCGGCTCCCAGAGAAAAATCGGCAGATGTTACAGCTGCTCATGAACCACTTGGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:143054439|143057747 FKBP4 0 1 0
chr5:143054439|143057747 BUD13 1 0 3
chr5:143054439|143057747 NOP58 0 1 1
chr5:143054439|143057747 U2AF2 9 7 0
chr5:143054439|143057747 TIA1 0 2 0
chr5:143054439|143057747 FUS 1 0 0
chr5:143054439|143057747 TARDBP 0 1 0
chr5:143054439|143057747 HNRNPM 0 1 0
chr5:143054439|143057747 TAF15 1 0 0
chr5:143054439|143057747 PTBP1 0 1 0
chr5:143054439|143057747 AGO2 1 0 0
chr5:143054439|143057747 EIF4A3 1 2 6
chr5:143054439|143057747 ELAVL1 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab