CircRNA Information

General Information
circRNA Basic Information
CircID chr5:143216469|143216651
Strand -
CircType exon
Host Gene ENSG00000145819.14;
Algorism CIRI2;
Sequence AGCCTCATGCCTTCTTCATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTCTGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTTGGTTGAGTGAGTGAGAGAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:143216469|143216651 hsa-miR-146a-5p 0 0 1
chr5:143216469|143216651 hsa-miR-146a-3p 0 0 1
chr5:143216469|143216651 hsa-miR-370-5p 0 0 1
chr5:143216469|143216651 hsa-miR-370-3p 0 0 1
chr5:143216469|143216651 hsa-miR-552-5p 0 0 1
chr5:143216469|143216651 hsa-miR-552-3p 0 0 1
chr5:143216469|143216651 hsa-miR-567 0 0 1
chr5:143216469|143216651 hsa-miR-580-5p 0 0 1
chr5:143216469|143216651 hsa-miR-580-3p 0 0 1
chr5:143216469|143216651 hsa-miR-589-5p 0 0 1
chr5:143216469|143216651 hsa-miR-589-3p 0 0 1
chr5:143216469|143216651 hsa-miR-591 0 0 1
chr5:143216469|143216651 hsa-miR-657 0 0 1
chr5:143216469|143216651 hsa-miR-920 0 0 1
chr5:143216469|143216651 hsa-miR-935 0 0 1
chr5:143216469|143216651 hsa-miR-297 0 0 1
chr5:143216469|143216651 hsa-miR-1238-5p 0 0 1
chr5:143216469|143216651 hsa-miR-1238-3p 0 0 1
chr5:143216469|143216651 hsa-miR-1290 0 0 1
chr5:143216469|143216651 hsa-miR-1258 0 0 1
chr5:143216469|143216651 hsa-miR-1272 0 0 1
chr5:143216469|143216651 hsa-miR-1322 0 0 1
chr5:143216469|143216651 hsa-miR-485-5p 0 0 1
chr5:143216469|143216651 hsa-miR-299-3p 0 0 1
chr5:143216469|143216651 hsa-miR-1207-5p 1 0 1
chr5:143216469|143216651 hsa-miR-146b-5p 1 0 1
chr5:143216469|143216651 hsa-miR-876-5p 0 0 1
chr5:143216469|143216651 hsa-miR-542-3p 0 0 1
chr5:143216469|143216651 hsa-miR-1300 0 0 1
chr5:143216469|143216651 hsa-miR-219-2-3p 0 0 1
chr5:143216469|143216651 hsa-miR-1183 1 0 0
chr5:143216469|143216651 hsa-miR-1246 1 0 0
chr5:143216469|143216651 hsa-miR-1976 0 1 0
chr5:143216469|143216651 hsa-miR-3185 0 1 0
chr5:143216469|143216651 hsa-miR-4259 1 0 0
chr5:143216469|143216651 hsa-miR-3621 1 0 0
chr5:143216469|143216651 hsa-miR-3665 1 0 0
chr5:143216469|143216651 hsa-miR-4467 1 0 0
chr5:143216469|143216651 hsa-miR-4507 1 0 0
chr5:143216469|143216651 hsa-miR-4736 1 1 0
chr5:143216469|143216651 hsa-miR-5090 1 0 0
chr5:143216469|143216651 hsa-miR-5093 1 0 0
chr5:143216469|143216651 hsa-miR-6081 0 1 0
chr5:143216469|143216651 hsa-miR-6086 1 0 0
chr5:143216469|143216651 hsa-miR-6088 1 0 0
chr5:143216469|143216651 hsa-miR-6090 1 0 0
chr5:143216469|143216651 hsa-miR-7150 1 0 0
chr5:143216469|143216651 hsa-miR-8060 0 1 0
chr5:143216469|143216651 hsa-miR-8072 1 0 0
chr5:143216469|143216651 hsa-miR-12114 1 0 0
chr5:143216469|143216651 hsa-miR-12125 0 1 0
chr5:143216469|143216651 hsa-miR-6799-5p 1 0 0
chr5:143216469|143216651 hsa-miR-1236-5p 1 0 0
chr5:143216469|143216651 hsa-miR-3934-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6880-5p 1 0 0
chr5:143216469|143216651 hsa-miR-4695-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6730-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6873-3p 1 0 0
chr5:143216469|143216651 hsa-miR-3190-3p 1 0 0
chr5:143216469|143216651 hsa-miR-1224-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6782-5p 1 0 0
chr5:143216469|143216651 hsa-miR-4713-5p 1 0 0
chr5:143216469|143216651 hsa-miR-3191-5p 1 0 0
chr5:143216469|143216651 hsa-miR-7854-3p 1 0 0
chr5:143216469|143216651 hsa-miR-6800-5p 1 1 0
chr5:143216469|143216651 hsa-miR-6802-5p 1 0 0
chr5:143216469|143216651 hsa-miR-7112-5p 0 1 0
chr5:143216469|143216651 hsa-miR-6895-3p 0 1 0
chr5:143216469|143216651 hsa-miR-3124-3p 0 1 0
chr5:143216469|143216651 hsa-miR-1229-3p 1 0 0
chr5:143216469|143216651 hsa-miR-6509-5p 1 0 0
chr5:143216469|143216651 hsa-miR-7159-5p 0 1 0
chr5:143216469|143216651 hsa-miR-10400-5p 1 0 0
chr5:143216469|143216651 hsa-miR-1233-5p 1 0 0
chr5:143216469|143216651 hsa-miR-4763-3p 1 0 0
chr5:143216469|143216651 hsa-miR-6778-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6812-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6816-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6865-5p 1 1 0
chr5:143216469|143216651 hsa-miR-6893-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6726-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6743-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6815-5p 1 0 0
chr5:143216469|143216651 hsa-miR-1237-5p 1 0 0
chr5:143216469|143216651 hsa-miR-328-5p 1 0 0
chr5:143216469|143216651 hsa-miR-4701-3p 1 0 0
chr5:143216469|143216651 hsa-miR-6846-5p 1 0 0
chr5:143216469|143216651 hsa-miR-4758-5p 1 0 0
chr5:143216469|143216651 hsa-miR-3940-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6855-5p 1 0 0
chr5:143216469|143216651 hsa-miR-6766-5p 1 0 0
chr5:143216469|143216651 hsa-miR-9851-5p 1 0 0
chr5:143216469|143216651 hsa-miR-550a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:143216469|143216651
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MPSSCSQARSANYDLPVKSNLPPVT
Nucleotide Sequence ATGCCTTCTTCATGTTCTCAAGCAAGGTCGGCAAACTATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAA
CircID chr5:143216469|143216651
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MTCPSNPTCHLSPNNSVTAPTYNMVVIINPIGIVESRRKVWLSE
Nucleotide Sequence ATGACCTGCCCGTCAAATCCAACCTGCCACCTGTCACCTAACAATTCTGTAACTGCTCCCACATACAACATGGTCGTCATCATAAATCCTATAGGTATTGTTGAGAGCAGGAGGAAAGTTTGGTTGAGTGAGTGA
CircID chr5:143216469|143216651
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MLSTIPIGFMMTTMLYVGAVTELLGDRWQVGFDGQVIVCRPCLRT
Nucleotide Sequence CTGCTCTCAACAATACCTATAGGATTTATGATGACGACCATGTTGTATGTGGGAGCAGTTACAGAATTGTTAGGTGACAGGTGGCAGGTTGGATTTGACGGGCAGGTCATAGTTTGCCGACCTTGCTTGAGAACATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab