CircRNA Information

General Information
circRNA Basic Information
CircID chr5:1446112|1446318
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCGGTGCCTTCTAAGGACCTGGACATCCTGGGCCTTGGCGGCCTGGGGGCTCCATTCCTCCGCGCGCTGAATGGAAGAAATCCCGCCCGGGCATCTCGGAAGGAAAGCCTCGGAGTCCATTCGGCCCTGGAGCCGGATACCAACCGCCAGGGCTTTCCAGGCCCGTCCCGGGAAATGGTTTTCTTAGGCGAGTGCGAGGCGGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:1446112|1446318 hsa-miR-198 0 0 1
chr5:1446112|1446318 hsa-miR-506-5p 0 0 1
chr5:1446112|1446318 hsa-miR-506-3p 0 0 1
chr5:1446112|1446318 hsa-miR-658 0 1 1
chr5:1446112|1446318 hsa-miR-1265 0 0 1
chr5:1446112|1446318 hsa-miR-1225-3p 1 1 1
chr5:1446112|1446318 hsa-miR-361-3p 0 0 1
chr5:1446112|1446318 hsa-miR-875-3p 0 1 1
chr5:1446112|1446318 hsa-miR-876-5p 0 0 1
chr5:1446112|1446318 hsa-miR-124 0 0 1
chr5:1446112|1446318 hsa-miR-1254 0 0 1
chr5:1446112|1446318 hsa-miR-923 0 0 1
chr5:1446112|1446318 hsa-miR-612 1 0 0
chr5:1446112|1446318 hsa-miR-661 1 0 0
chr5:1446112|1446318 hsa-miR-663a 1 0 0
chr5:1446112|1446318 hsa-miR-762 1 0 0
chr5:1446112|1446318 hsa-miR-2861 1 0 0
chr5:1446112|1446318 hsa-miR-3141 1 0 0
chr5:1446112|1446318 hsa-miR-3188 0 1 0
chr5:1446112|1446318 hsa-miR-3713 0 1 0
chr5:1446112|1446318 hsa-miR-3918 0 1 0
chr5:1446112|1446318 hsa-miR-3943 0 1 0
chr5:1446112|1446318 hsa-miR-9900 0 1 0
chr5:1446112|1446318 hsa-miR-6840-3p 0 1 0
chr5:1446112|1446318 hsa-miR-1247-3p 0 1 0
chr5:1446112|1446318 hsa-miR-671-5p 1 1 0
chr5:1446112|1446318 hsa-miR-766-5p 0 1 0
chr5:1446112|1446318 hsa-miR-874-3p 1 0 0
chr5:1446112|1446318 hsa-miR-1915-5p 1 0 0
chr5:1446112|1446318 hsa-miR-4640-5p 1 0 0
chr5:1446112|1446318 hsa-miR-1228-5p 1 0 0
chr5:1446112|1446318 hsa-miR-4783-5p 1 0 0
chr5:1446112|1446318 hsa-miR-6749-5p 0 1 0
chr5:1446112|1446318 hsa-miR-4743-5p 0 1 0
chr5:1446112|1446318 hsa-miR-6877-5p 0 1 0
chr5:1446112|1446318 hsa-miR-3922-5p 0 1 0
chr5:1446112|1446318 hsa-miR-219b-5p 0 1 0
chr5:1446112|1446318 hsa-miR-5001-5p 1 0 0
chr5:1446112|1446318 hsa-miR-6756-5p 1 0 0
chr5:1446112|1446318 hsa-miR-10396b-5p 1 0 0
chr5:1446112|1446318 hsa-miR-4685-5p 0 1 0
chr5:1446112|1446318 hsa-miR-4745-5p 0 1 0
chr5:1446112|1446318 hsa-miR-6837-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:1446112|1446318
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MDILGLGGLGAPFLRALNGRNPARASRKESLGVHSALEPDTNRQGFPGPSREMVFLGECEAG
Nucleotide Sequence CTGGACATCCTGGGCCTTGGCGGCCTGGGGGCTCCATTCCTCCGCGCGCTGAATGGAAGAAATCCCGCCCGGGCATCTCGGAAGGAAAGCCTCGGAGTCCATTCGGCCCTGGAGCCGGATACCAACCGCCAGGGCTTTCCAGGCCCGTCCCGGGAAATGGTTTTCTTAGGCGAGTGCGAGGCGGGC
CircID chr5:1446112|1446318
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MEEIPPGHLGRKASESIRPWSRIPTARAFQARPGKWFS
Nucleotide Sequence ATGGAAGAAATCCCGCCCGGGCATCTCGGAAGGAAAGCCTCGGAGTCCATTCGGCCCTGGAGCCGGATACCAACCGCCAGGGCTTTCCAGGCCCGTCCCGGGAAATGGTTTTCTTAG
CircID chr5:1446112|1446318
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MVSGSRAEWTPRLSFRDARAGFLPFSARRNGAPRPPRPRMSRSLEGTE
Nucleotide Sequence TTGGTATCCGGCTCCAGGGCCGAATGGACTCCGAGGCTTTCCTTCCGAGATGCCCGGGCGGGATTTCTTCCATTCAGCGCGCGGAGGAATGGAGCCCCCAGGCCGCCAAGGCCCAGGATGTCCAGGTCCTTAGAAGGCACCGAG
CircID chr5:1446112|1446318
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MESPGGWYPAPGPNGLRGFPSEMPGRDFFHSARGGMEPPGRQGPGCPGP
Nucleotide Sequence CTGGAAAGCCCTGGCGGTTGGTATCCGGCTCCAGGGCCGAATGGACTCCGAGGCTTTCCTTCCGAGATGCCCGGGCGGGATTTCTTCCATTCAGCGCGCGGAGGAATGGAGCCCCCAGGCCGCCAAGGCCCAGGATGTCCAGGTCCTTAG
CircID chr5:1446112|1446318
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MAVGIRLQGRMDSEAFLPRCPGGISSIQRAEEWSPQAAKAQDVQVLRRHR
Nucleotide Sequence CTGGCGGTTGGTATCCGGCTCCAGGGCCGAATGGACTCCGAGGCTTTCCTTCCGAGATGCCCGGGCGGGATTTCTTCCATTCAGCGCGCGGAGGAATGGAGCCCCCAGGCCGCCAAGGCCCAGGATGTCCAGGTCCTTAGAAGGCACCGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab