CircRNA Information

General Information
circRNA Basic Information
CircID chr5:146128716|146129022
Strand +
CircType exon
Host Gene ENSG00000133706.16;
Algorism CIRI2;
Sequence CTTAGACTACGACTCAAGAACTATATGATGCCAGCTAAAGGGAAGGTAAAGTTTTTTTGTTTTTTTTTTTAAAGGATTATTCCTTAAAAGTTATTGATCAGATAACATTTAACAATAATGAAAGTTAAAAAGATTTTCATTAATGGTGAAGACCGTGGTGGTGTATGTTGGGGGAGGGTTCTTCTCATTTTTGGTTTATATAAAAGCTATTGAATGTTTTTCCTTTCTTTTACCGTCTAGAAGACTGACAAACAACCCCTGCAGAAGCCCTCACATTGCACCATCTATGTGGCAAAGAACTATCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:146128716|146129022 hsa-miR-197-5p 0 0 1
chr5:146128716|146129022 hsa-miR-197-3p 0 0 1
chr5:146128716|146129022 hsa-miR-181c-5p 0 0 1
chr5:146128716|146129022 hsa-miR-181c-3p 0 0 1
chr5:146128716|146129022 hsa-miR-204-5p 0 0 1
chr5:146128716|146129022 hsa-miR-204-3p 0 0 1
chr5:146128716|146129022 hsa-miR-211-5p 0 0 1
chr5:146128716|146129022 hsa-miR-211-3p 0 0 1
chr5:146128716|146129022 hsa-miR-223-5p 0 0 1
chr5:146128716|146129022 hsa-miR-223-3p 0 0 1
chr5:146128716|146129022 hsa-miR-376c-5p 0 0 1
chr5:146128716|146129022 hsa-miR-376c-3p 0 0 1
chr5:146128716|146129022 hsa-miR-412-5p 0 0 1
chr5:146128716|146129022 hsa-miR-412-3p 0 0 1
chr5:146128716|146129022 hsa-miR-410-5p 0 0 1
chr5:146128716|146129022 hsa-miR-410-3p 0 0 1
chr5:146128716|146129022 hsa-miR-181d-5p 0 0 1
chr5:146128716|146129022 hsa-miR-181d-3p 0 0 1
chr5:146128716|146129022 hsa-miR-526b-5p 0 0 1
chr5:146128716|146129022 hsa-miR-526b-3p 0 0 1
chr5:146128716|146129022 hsa-miR-622 0 0 1
chr5:146128716|146129022 hsa-miR-623 0 0 1
chr5:146128716|146129022 hsa-miR-627-5p 0 0 1
chr5:146128716|146129022 hsa-miR-627-3p 0 0 1
chr5:146128716|146129022 hsa-miR-543 0 0 1
chr5:146128716|146129022 hsa-miR-1205 0 0 1
chr5:146128716|146129022 hsa-miR-1294 0 0 1
chr5:146128716|146129022 hsa-miR-1253 0 0 1
chr5:146128716|146129022 hsa-miR-1184 0 0 1
chr5:146128716|146129022 hsa-miR-361-3p 0 0 1
chr5:146128716|146129022 hsa-miR-501-5p 0 0 1
chr5:146128716|146129022 hsa-miR-483-5p 0 0 1
chr5:146128716|146129022 hsa-miR-518d-5p 0 0 1
chr5:146128716|146129022 hsa-miR-519b-5p 0 0 1
chr5:146128716|146129022 hsa-miR-519c-5p 0 0 1
chr5:146128716|146129022 hsa-miR-520c-5p 0 0 1
chr5:146128716|146129022 hsa-miR-548b-3p 0 0 1
chr5:146128716|146129022 hsa-miR-220b 0 0 1
chr5:146128716|146129022 hsa-miR-181a 0 0 1
chr5:146128716|146129022 hsa-miR-181b 0 0 1
chr5:146128716|146129022 hsa-miR-500 0 0 1
chr5:146128716|146129022 hsa-miR-1300 0 0 1
chr5:146128716|146129022 hsa-miR-544 0 0 1
chr5:146128716|146129022 hsa-miR-526a 0 0 1
chr5:146128716|146129022 hsa-miR-637 1 0 0
chr5:146128716|146129022 hsa-miR-1183 1 0 0
chr5:146128716|146129022 hsa-miR-1470 1 0 0
chr5:146128716|146129022 hsa-miR-3188 1 0 0
chr5:146128716|146129022 hsa-miR-4322 1 0 0
chr5:146128716|146129022 hsa-miR-4447 1 0 0
chr5:146128716|146129022 hsa-miR-4647 1 0 0
chr5:146128716|146129022 hsa-miR-4710 1 0 0
chr5:146128716|146129022 hsa-miR-4721 1 0 0
chr5:146128716|146129022 hsa-miR-5194 1 0 0
chr5:146128716|146129022 hsa-miR-12114 1 0 0
chr5:146128716|146129022 hsa-miR-12119 1 0 0
chr5:146128716|146129022 hsa-miR-12121 1 0 0
chr5:146128716|146129022 hsa-miR-29b-1-5p 1 0 0
chr5:146128716|146129022 hsa-miR-4687-3p 1 0 0
chr5:146128716|146129022 hsa-miR-6510-5p 1 0 0
chr5:146128716|146129022 hsa-miR-6804-5p 1 0 0
chr5:146128716|146129022 hsa-miR-8069 1 0 0
chr5:146128716|146129022 hsa-miR-6829-5p 1 0 0
chr5:146128716|146129022 hsa-miR-221-3p 1 0 0
chr5:146128716|146129022 hsa-miR-5088-5p 1 0 0
chr5:146128716|146129022 hsa-miR-1226-5p 1 0 0
chr5:146128716|146129022 hsa-miR-3127-5p 1 0 0
chr5:146128716|146129022 hsa-miR-4446-3p 1 0 0
chr5:146128716|146129022 hsa-miR-6717-5p 1 0 0
chr5:146128716|146129022 hsa-miR-3616-3p 1 0 0
chr5:146128716|146129022 hsa-miR-6776-3p 1 0 0
chr5:146128716|146129022 hsa-miR-4687-5p 1 0 0
chr5:146128716|146129022 hsa-miR-3158-3p 1 0 0
chr5:146128716|146129022 hsa-miR-6800-3p 1 0 0
chr5:146128716|146129022 hsa-miR-4763-3p 1 0 0
chr5:146128716|146129022 hsa-miR-6846-5p 1 0 0
chr5:146128716|146129022 hsa-miR-6848-5p 1 0 0
chr5:146128716|146129022 hsa-miR-3085-5p 1 0 0
chr5:146128716|146129022 hsa-miR-7114-3p 1 0 0
chr5:146128716|146129022 hsa-miR-130b-3p 1 0 0
chr5:146128716|146129022 hsa-miR-130a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:146128716|146129022
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MKVKKIFINGEDRGGVCWGRVLLIFGLYKSY
Nucleotide Sequence ATGAAAGTTAAAAAGATTTTCATTAATGGTGAAGACCGTGGTGGTGTATGTTGGGGGAGGGTTCTTCTCATTTTTGGTTTATATAAAAGCTATTGA
CircID chr5:146128716|146129022
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MVKTVVVYVGGGFFSFLVYIKAIECFSFLLPSRRLTNNPCRSPHIAPSMWQRTIH
Nucleotide Sequence ATGGTGAAGACCGTGGTGGTGTATGTTGGGGGAGGGTTCTTCTCATTTTTGGTTTATATAAAAGCTATTGAATGTTTTTCCTTTCTTTTACCGTCTAGAAGACTGACAAACAACCCCTGCAGAAGCCCTCACATTGCACCATCTATGTGGCAAAGAACTATCCAC
CircID chr5:146128716|146129022
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MRRTLPQHTPPRSSPLMKIFLTFIIVKCYLINNF
Nucleotide Sequence ATGAGAAGAACCCTCCCCCAACATACACCACCACGGTCTTCACCATTAATGAAAATCTTTTTAACTTTCATTATTGTTAAATGTTATCTGATCAATAACTTTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab