CircRNA Information

General Information
circRNA Basic Information
CircID chr5:146261532|146261795
Strand +
CircType exon
Host Gene ENSG00000275740.1;
Algorism CIRI2;
Sequence CTCCGTGCACTGTTGAAGGAGCAGACTGGGCCACTAGCACCTGCTGCTGATGTAGATGCTGTGGCAGGTGATGGTGCTGCTGTGAGAGGTGACTAAGTGTTTGCTGTTGTTGCAGGAGCAGCTGTGCTGAGGACTGTAGTGTCGGTTGCTCATTATTTTCCCTATGCCACAAGACTCGAATGAATCGGTTGTTTAGAACTGCTTCTGTGCTAGAAATGGCTTTCCTGGCCTCCTCATTGGTAAGATATTGGATTAGGGCTGCTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:146261532|146261795 hsa-miR-15a-5p 0 0 1
chr5:146261532|146261795 hsa-miR-15a-3p 0 0 1
chr5:146261532|146261795 hsa-miR-29a-5p 0 0 1
chr5:146261532|146261795 hsa-miR-29a-3p 0 0 1
chr5:146261532|146261795 hsa-miR-148a-5p 0 0 1
chr5:146261532|146261795 hsa-miR-148a-3p 0 0 1
chr5:146261532|146261795 hsa-miR-205-5p 0 0 1
chr5:146261532|146261795 hsa-miR-205-3p 0 0 1
chr5:146261532|146261795 hsa-miR-214-5p 0 0 1
chr5:146261532|146261795 hsa-miR-214-3p 0 0 1
chr5:146261532|146261795 hsa-miR-15b-5p 0 0 1
chr5:146261532|146261795 hsa-miR-15b-3p 0 0 1
chr5:146261532|146261795 hsa-miR-152-5p 0 0 1
chr5:146261532|146261795 hsa-miR-152-3p 0 0 1
chr5:146261532|146261795 hsa-miR-195-5p 0 0 1
chr5:146261532|146261795 hsa-miR-195-3p 0 0 1
chr5:146261532|146261795 hsa-miR-29c-5p 0 0 1
chr5:146261532|146261795 hsa-miR-29c-3p 0 0 1
chr5:146261532|146261795 hsa-miR-148b-5p 0 0 1
chr5:146261532|146261795 hsa-miR-148b-3p 0 0 1
chr5:146261532|146261795 hsa-miR-424-5p 0 0 1
chr5:146261532|146261795 hsa-miR-424-3p 0 0 1
chr5:146261532|146261795 hsa-miR-497-5p 0 0 1
chr5:146261532|146261795 hsa-miR-497-3p 0 0 1
chr5:146261532|146261795 hsa-miR-545-5p 0 0 1
chr5:146261532|146261795 hsa-miR-545-3p 0 0 1
chr5:146261532|146261795 hsa-miR-581 0 0 1
chr5:146261532|146261795 hsa-miR-622 0 0 1
chr5:146261532|146261795 hsa-miR-421 0 0 1
chr5:146261532|146261795 hsa-miR-1298-5p 0 0 1
chr5:146261532|146261795 hsa-miR-1298-3p 0 0 1
chr5:146261532|146261795 hsa-miR-922 0 0 1
chr5:146261532|146261795 hsa-miR-924 0 0 1
chr5:146261532|146261795 hsa-miR-663b 0 0 1
chr5:146261532|146261795 hsa-miR-139-5p 0 0 1
chr5:146261532|146261795 hsa-miR-767-5p 0 0 1
chr5:146261532|146261795 hsa-miR-767-3p 0 0 1
chr5:146261532|146261795 hsa-miR-342-3p 0 0 1
chr5:146261532|146261795 hsa-miR-16 0 0 1
chr5:146261532|146261795 hsa-miR-664 0 0 1
chr5:146261532|146261795 hsa-miR-29b 0 0 1
chr5:146261532|146261795 hsa-miR-499-3p 0 0 1
chr5:146261532|146261795 hsa-miR-1182 1 0 0
chr5:146261532|146261795 hsa-miR-4739 1 0 0
chr5:146261532|146261795 hsa-miR-187-3p 1 0 0
chr5:146261532|146261795 hsa-miR-6765-5p 1 0 0
chr5:146261532|146261795 hsa-miR-671-5p 1 0 0
chr5:146261532|146261795 hsa-miR-6825-5p 1 0 0
chr5:146261532|146261795 hsa-miR-1972 1 0 0
chr5:146261532|146261795 hsa-miR-6089 1 0 0
chr5:146261532|146261795 hsa-miR-4695-5p 1 0 0
chr5:146261532|146261795 hsa-miR-345-3p 1 0 0
chr5:146261532|146261795 hsa-miR-4640-5p 1 0 0
chr5:146261532|146261795 hsa-miR-625-5p 1 0 0
chr5:146261532|146261795 hsa-miR-1287-3p 1 0 0
chr5:146261532|146261795 hsa-miR-6743-5p 1 0 0
chr5:146261532|146261795 hsa-miR-7111-5p 1 0 0
chr5:146261532|146261795 hsa-miR-328-5p 1 0 0
chr5:146261532|146261795 hsa-miR-4726-5p 1 0 0
chr5:146261532|146261795 hsa-miR-6858-5p 1 0 0
chr5:146261532|146261795 hsa-miR-6762-5p 1 0 0
chr5:146261532|146261795 hsa-miR-6820-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:146261532|146261795
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLKEQTGPLAPAADVDAVAGDGAAVRGD
Nucleotide Sequence CTGTTGAAGGAGCAGACTGGGCCACTAGCACCTGCTGCTGATGTAGATGCTGTGGCAGGTGATGGTGCTGCTGTGAGAGGTGACTAA
CircID chr5:146261532|146261795
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MNRLFRTASVLEMAFLASSLVRYWIRAA
Nucleotide Sequence ATGAATCGGTTGTTTAGAACTGCTTCTGTGCTAGAAATGGCTTTCCTGGCCTCCTCATTGGTAAGATATTGGATTAGGGCTGCT
CircID chr5:146261532|146261795
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MSNRHYSPQHSCSCNNSKHLVTSHSSTITCHSIYISSRC
Nucleotide Sequence ATGAGCAACCGACACTACAGTCCTCAGCACAGCTGCTCCTGCAACAACAGCAAACACTTAGTCACCTCTCACAGCAGCACCATCACCTGCCACAGCATCTACATCAGCAGCAGGTGCTAG
CircID chr5:146261532|146261795
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MWHRENNEQPTLQSSAQLLLQQQQTLSHLSQQHHHLPQHLHQQQVLVAQSAPSTVHG
Nucleotide Sequence TTGTGGCATAGGGAAAATAATGAGCAACCGACACTACAGTCCTCAGCACAGCTGCTCCTGCAACAACAGCAAACACTTAGTCACCTCTCACAGCAGCACCATCACCTGCCACAGCATCTACATCAGCAGCAGGTGCTAGTGGCCCAGTCTGCTCCTTCAACAGTGCACGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab