CircRNA Information

General Information
circRNA Basic Information
CircID chr5:149368255|149368374
Strand -
CircType exon
Host Gene ENSG00000145882.9;
Algorism CIRI2;
Sequence AGATTTCCCCAGCTTCTTCTGCACTCTGGACAACATCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCAGTCCCCCAAGCCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:149368255|149368374 hsa-miR-22-5p 0 0 1
chr5:149368255|149368374 hsa-miR-22-3p 0 0 1
chr5:149368255|149368374 hsa-miR-198 1 1 1
chr5:149368255|149368374 hsa-miR-422a 0 0 1
chr5:149368255|149368374 hsa-miR-625-5p 0 0 1
chr5:149368255|149368374 hsa-miR-625-3p 0 0 1
chr5:149368255|149368374 hsa-miR-298 0 1 1
chr5:149368255|149368374 hsa-miR-1275 0 0 1
chr5:149368255|149368374 hsa-miR-525-5p 0 0 1
chr5:149368255|149368374 hsa-miR-520a-5p 0 0 1
chr5:149368255|149368374 hsa-miR-378 0 0 1
chr5:149368255|149368374 hsa-miR-637 1 0 0
chr5:149368255|149368374 hsa-miR-646 1 1 0
chr5:149368255|149368374 hsa-miR-762 1 0 0
chr5:149368255|149368374 hsa-miR-3125 0 1 0
chr5:149368255|149368374 hsa-miR-3132 1 0 0
chr5:149368255|149368374 hsa-miR-378b 0 1 0
chr5:149368255|149368374 hsa-miR-3138 1 0 0
chr5:149368255|149368374 hsa-miR-3141 1 0 0
chr5:149368255|149368374 hsa-miR-378c 0 1 0
chr5:149368255|149368374 hsa-miR-3654 0 1 0
chr5:149368255|149368374 hsa-miR-378e 0 1 0
chr5:149368255|149368374 hsa-miR-378f 0 1 0
chr5:149368255|149368374 hsa-miR-378h 0 1 0
chr5:149368255|149368374 hsa-miR-4487 1 0 0
chr5:149368255|149368374 hsa-miR-4508 1 0 0
chr5:149368255|149368374 hsa-miR-4515 1 1 0
chr5:149368255|149368374 hsa-miR-4669 1 0 0
chr5:149368255|149368374 hsa-miR-4688 1 0 0
chr5:149368255|149368374 hsa-miR-4741 1 0 0
chr5:149368255|149368374 hsa-miR-4748 1 0 0
chr5:149368255|149368374 hsa-miR-5090 1 1 0
chr5:149368255|149368374 hsa-miR-6085 0 1 0
chr5:149368255|149368374 hsa-miR-6088 1 0 0
chr5:149368255|149368374 hsa-miR-6165 1 0 0
chr5:149368255|149368374 hsa-miR-8085 1 0 0
chr5:149368255|149368374 hsa-miR-8089 1 0 0
chr5:149368255|149368374 hsa-miR-12128 1 0 0
chr5:149368255|149368374 hsa-miR-370-3p 1 0 0
chr5:149368255|149368374 hsa-miR-504-3p 1 0 0
chr5:149368255|149368374 hsa-miR-671-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6861-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6894-5p 1 0 0
chr5:149368255|149368374 hsa-miR-4687-3p 1 0 0
chr5:149368255|149368374 hsa-miR-25-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6799-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6089 1 0 0
chr5:149368255|149368374 hsa-miR-6820-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6762-3p 0 1 0
chr5:149368255|149368374 hsa-miR-6727-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6721-5p 1 0 0
chr5:149368255|149368374 hsa-miR-197-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6776-5p 1 0 0
chr5:149368255|149368374 hsa-miR-185-3p 1 1 0
chr5:149368255|149368374 hsa-miR-2467-3p 1 0 0
chr5:149368255|149368374 hsa-miR-6888-5p 1 0 0
chr5:149368255|149368374 hsa-miR-5006-5p 1 0 0
chr5:149368255|149368374 hsa-miR-1343-3p 0 1 0
chr5:149368255|149368374 hsa-miR-485-5p 1 1 0
chr5:149368255|149368374 hsa-miR-149-3p 1 0 0
chr5:149368255|149368374 hsa-miR-6824-5p 1 0 0
chr5:149368255|149368374 hsa-miR-3191-3p 1 0 0
chr5:149368255|149368374 hsa-miR-4652-5p 0 1 0
chr5:149368255|149368374 hsa-miR-1207-5p 1 1 0
chr5:149368255|149368374 hsa-miR-4763-3p 1 0 0
chr5:149368255|149368374 hsa-miR-6865-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6870-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6893-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6775-5p 1 0 0
chr5:149368255|149368374 hsa-miR-5001-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6726-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6803-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6813-5p 0 1 0
chr5:149368255|149368374 hsa-miR-6808-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6879-5p 1 0 0
chr5:149368255|149368374 hsa-miR-7111-5p 1 0 0
chr5:149368255|149368374 hsa-miR-3620-5p 1 0 0
chr5:149368255|149368374 hsa-miR-1237-5p 1 0 0
chr5:149368255|149368374 hsa-miR-328-5p 1 0 0
chr5:149368255|149368374 hsa-miR-4632-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6735-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6794-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6795-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6846-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6848-5p 1 0 0
chr5:149368255|149368374 hsa-miR-4436b-3p 1 0 0
chr5:149368255|149368374 hsa-miR-6831-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6885-5p 1 0 0
chr5:149368255|149368374 hsa-miR-939-5p 1 0 0
chr5:149368255|149368374 hsa-miR-6791-3p 0 1 0
chr5:149368255|149368374 hsa-miR-378a-3p 0 1 0
chr5:149368255|149368374 hsa-miR-6791-5p 1 0 0
chr5:149368255|149368374 hsa-miR-9851-5p 1 1 0
chr5:149368255|149368374 hsa-miR-6529-5p 1 0 0
chr5:149368255|149368374 hsa-miR-320a-3p 1 0 0
chr5:149368255|149368374 hsa-miR-320b 1 0 0
chr5:149368255|149368374 hsa-miR-320c 1 0 0
chr5:149368255|149368374 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:149368255|149368374
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MHSGQHLPCQHLCQLPAKAAPGGSCLASPVPQAP
Nucleotide Sequence CTGCACTCTGGACAACATCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCAGTCCCCCAAGCCCCT
CircID chr5:149368255|149368374
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MDNICPVNISASFRRKQPQEAAVWRVQSPKP
Nucleotide Sequence CTGGACAACATCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCAGTCCCCCAAGCCC
CircID chr5:149368255|149368374
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MSTSLPASGESSPRRQLFGESSPPSP
Nucleotide Sequence CTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCAGTCCCCCAAGCCCC
CircID chr5:149368255|149368374
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MGDWTRQTAASWGCFRRKLAEMLTGQMLSRVQKKLGKS
Nucleotide Sequence TTGGGGGACTGGACTCGCCAAACAGCTGCCTCCTGGGGCTGCTTTCGCCGGAAGCTGGCAGAGATGTTGACAGGGCAGATGTTGTCCAGAGTGCAGAAGAAGCTGGGGAAATCT
CircID chr5:149368255|149368374
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MDSPNSCLLGLLSPEAGRDVDRADVVQSAEEAGEI
Nucleotide Sequence CTGGACTCGCCAAACAGCTGCCTCCTGGGGCTGCTTTCGCCGGAAGCTGGCAGAGATGTTGACAGGGCAGATGTTGTCCAGAGTGCAGAAGAAGCTGGGGAAATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab