CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150010219|150010388
Strand +
CircType exon
Host Gene ENSG00000113716.11;
Algorism CIRI2;
Sequence TGGGTAAGGGCTCCCACCTCCTCAGCCAGGGCCTCCACAGCCAGGCACTGCTCTGCCATGCCTGCATGGCTGGGCACTGTCTCCGGGGCAGTGTTGGACACAAGAGGAGGTCCTTTCGGGGACATCTGGTTCTGAGCCACACATAGCTCTAGCTGAGGGCAGCTCCGGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150010219|150010388 hsa-miR-22-5p 0 0 1
chr5:150010219|150010388 hsa-miR-22-3p 0 0 1
chr5:150010219|150010388 hsa-miR-141-5p 0 0 1
chr5:150010219|150010388 hsa-miR-141-3p 0 0 1
chr5:150010219|150010388 hsa-miR-200a-5p 0 0 1
chr5:150010219|150010388 hsa-miR-200a-3p 0 0 1
chr5:150010219|150010388 hsa-miR-519e-5p 0 0 1
chr5:150010219|150010388 hsa-miR-519e-3p 0 0 1
chr5:150010219|150010388 hsa-miR-558 0 0 1
chr5:150010219|150010388 hsa-miR-581 0 0 1
chr5:150010219|150010388 hsa-miR-592 0 0 1
chr5:150010219|150010388 hsa-miR-599 0 0 1
chr5:150010219|150010388 hsa-miR-650 0 0 1
chr5:150010219|150010388 hsa-miR-661 0 0 1
chr5:150010219|150010388 hsa-miR-920 0 0 1
chr5:150010219|150010388 hsa-miR-938 0 0 1
chr5:150010219|150010388 hsa-miR-1203 0 0 1
chr5:150010219|150010388 hsa-miR-1291 0 1 1
chr5:150010219|150010388 hsa-miR-324-3p 0 0 1
chr5:150010219|150010388 hsa-miR-515-3p 0 1 1
chr5:150010219|150010388 hsa-miR-1233 0 0 1
chr5:150010219|150010388 hsa-miR-550 0 0 1
chr5:150010219|150010388 hsa-miR-644 0 0 1
chr5:150010219|150010388 hsa-miR-1254 0 0 1
chr5:150010219|150010388 hsa-miR-129-3p 0 0 1
chr5:150010219|150010388 hsa-miR-24 0 0 1
chr5:150010219|150010388 hsa-miR-147 0 0 1
chr5:150010219|150010388 hsa-miR-762 1 0 0
chr5:150010219|150010388 hsa-miR-1538 1 0 0
chr5:150010219|150010388 hsa-miR-2278 0 1 0
chr5:150010219|150010388 hsa-miR-2861 1 0 0
chr5:150010219|150010388 hsa-miR-4281 1 0 0
chr5:150010219|150010388 hsa-miR-4421 1 0 0
chr5:150010219|150010388 hsa-miR-4443 0 1 0
chr5:150010219|150010388 hsa-miR-4656 1 0 0
chr5:150010219|150010388 hsa-miR-4689 1 0 0
chr5:150010219|150010388 hsa-miR-5091 0 1 0
chr5:150010219|150010388 hsa-miR-5787 1 1 0
chr5:150010219|150010388 hsa-miR-6081 1 1 0
chr5:150010219|150010388 hsa-miR-7974 0 1 0
chr5:150010219|150010388 hsa-miR-8077 1 0 0
chr5:150010219|150010388 hsa-miR-671-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6861-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6825-5p 1 1 0
chr5:150010219|150010388 hsa-miR-6881-3p 0 1 0
chr5:150010219|150010388 hsa-miR-7114-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6089 1 0 0
chr5:150010219|150010388 hsa-miR-6880-5p 1 0 0
chr5:150010219|150010388 hsa-miR-7847-3p 0 1 0
chr5:150010219|150010388 hsa-miR-3064-5p 0 1 0
chr5:150010219|150010388 hsa-miR-3622b-5p 0 1 0
chr5:150010219|150010388 hsa-miR-6806-5p 1 1 0
chr5:150010219|150010388 hsa-miR-874-3p 1 0 0
chr5:150010219|150010388 hsa-miR-659-3p 1 0 0
chr5:150010219|150010388 hsa-miR-6732-5p 1 0 0
chr5:150010219|150010388 hsa-miR-1226-5p 1 0 0
chr5:150010219|150010388 hsa-miR-2277-3p 1 0 0
chr5:150010219|150010388 hsa-miR-5010-3p 0 1 0
chr5:150010219|150010388 hsa-miR-4787-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6501-3p 0 1 0
chr5:150010219|150010388 hsa-miR-4524a-3p 0 1 0
chr5:150010219|150010388 hsa-miR-4740-3p 0 1 0
chr5:150010219|150010388 hsa-miR-1207-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6756-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6803-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6836-5p 1 0 0
chr5:150010219|150010388 hsa-miR-4632-5p 0 1 0
chr5:150010219|150010388 hsa-miR-6858-5p 0 1 0
chr5:150010219|150010388 hsa-miR-6511b-5p 1 1 0
chr5:150010219|150010388 hsa-miR-1271-3p 0 1 0
chr5:150010219|150010388 hsa-miR-3689d 0 1 0
chr5:150010219|150010388 hsa-miR-550a-5p 1 0 0
chr5:150010219|150010388 hsa-miR-3085-3p 0 1 0
chr5:150010219|150010388 hsa-miR-33b-3p 0 1 0
chr5:150010219|150010388 hsa-miR-6500-5p 1 0 0
chr5:150010219|150010388 hsa-miR-6504-5p 0 1 0
chr5:150010219|150010388 hsa-miR-6811-5p 0 1 0
chr5:150010219|150010388 hsa-miR-129-1-3p 0 1 0
chr5:150010219|150010388 hsa-miR-129-2-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:150010219|150010388
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MPAWLGTVSGAVLDTRGGPFGDIWF
Nucleotide Sequence ATGCCTGCATGGCTGGGCACTGTCTCCGGGGCAGTGTTGGACACAAGAGGAGGTCCTTTCGGGGACATCTGGTTCTGA
CircID chr5:150010219|150010388
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MPCLHGWALSPGQCWTQEEVLSGTSGSEPHIALAEGSSG
Nucleotide Sequence CTGCCATGCCTGCATGGCTGGGCACTGTCTCCGGGGCAGTGTTGGACACAAGAGGAGGTCCTTTCGGGGACATCTGGTTCTGAGCCACACATAGCTCTAGCTGAGGGCAGCTCCGGT
CircID chr5:150010219|150010388
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MLCHACMAGHCLRGSVGHKRRSFRGHLVLSHT
Nucleotide Sequence CTGCTCTGCCATGCCTGCATGGCTGGGCACTGTCTCCGGGGCAGTGTTGGACACAAGAGGAGGTCCTTTCGGGGACATCTGGTTCTGAGCCACACATAG
CircID chr5:150010219|150010388
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MSPKGPPLVSNTAPETVPSHAGMAEQCLAVEALAEEVGALT
Nucleotide Sequence ATGTCCCCGAAAGGACCTCCTCTTGTGTCCAACACTGCCCCGGAGACAGTGCCCAGCCATGCAGGCATGGCAGAGCAGTGCCTGGCTGTGGAGGCCCTGGCTGAGGAGGTGGGAGCCCTTACC
CircID chr5:150010219|150010388
ORF Type ORF5
Protein Length 34
Nucleotide Length 102
Protein Sequence MCPTLPRRQCPAMQAWQSSAWLWRPWLRRWEPLP
Nucleotide Sequence TTGTGTCCAACACTGCCCCGGAGACAGTGCCCAGCCATGCAGGCATGGCAGAGCAGTGCCTGGCTGTGGAGGCCCTGGCTGAGGAGGTGGGAGCCCTTACCC
CircID chr5:150010219|150010388
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MPSARAMCGSEPDVPERTSSCVQHCPGDSAQPCRHGRAVPGCGGPG
Nucleotide Sequence CTGCCCTCAGCTAGAGCTATGTGTGGCTCAGAACCAGATGTCCCCGAAAGGACCTCCTCTTGTGTCCAACACTGCCCCGGAGACAGTGCCCAGCCATGCAGGCATGGCAGAGCAGTGCCTGGCTGTGGAGGCCCTGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab