CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150052157|150052444
Strand +
CircType exon
Host Gene ENSG00000113716.11;
Algorism CIRI2;
Sequence ATACCGTGTCCCCCAAGTGCTCTCTCGGGGCCAGAAGAGGTTTCCTGGTACCACTCCTGACCCCTGGAGGGTTGAGAACTGAGGACCCTGGGTCCCACCATGCTCAGGGAATGGAAGCTCTTTGGTCAGTCCCAGCAGTCAGAGGCCCTCCCCACAGGAGACCACTTCTGCAGGTCCCCTGGATAGCTCTGCCTCAGGCAAGGGCCTTACTATGGCTTGAGAGATGGTGTAGTCCCTGTACAACAGCCTGGCTTATTCTGCCACTGCGGCCACCTCCTCTTCCTCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150052157|150052444 hsa-miR-345-5p 0 0 1
chr5:150052157|150052444 hsa-miR-345-3p 0 0 1
chr5:150052157|150052444 hsa-miR-492 0 1 1
chr5:150052157|150052444 hsa-miR-625-5p 0 0 1
chr5:150052157|150052444 hsa-miR-625-3p 0 0 1
chr5:150052157|150052444 hsa-miR-298 0 0 1
chr5:150052157|150052444 hsa-miR-541-5p 0 0 1
chr5:150052157|150052444 hsa-miR-541-3p 0 0 1
chr5:150052157|150052444 hsa-miR-939-5p 0 0 1
chr5:150052157|150052444 hsa-miR-939-3p 0 0 1
chr5:150052157|150052444 hsa-miR-1263 0 0 1
chr5:150052157|150052444 hsa-miR-1275 0 0 1
chr5:150052157|150052444 hsa-miR-1276 0 0 1
chr5:150052157|150052444 hsa-miR-513c-5p 0 0 1
chr5:150052157|150052444 hsa-miR-513c-3p 0 0 1
chr5:150052157|150052444 hsa-miR-1827 0 0 1
chr5:150052157|150052444 hsa-miR-491-5p 0 0 1
chr5:150052157|150052444 hsa-miR-654-5p 0 0 1
chr5:150052157|150052444 hsa-miR-125a-5p 0 0 1
chr5:150052157|150052444 hsa-miR-1274a 0 0 1
chr5:150052157|150052444 hsa-miR-125b 0 0 1
chr5:150052157|150052444 hsa-miR-1201 0 0 1
chr5:150052157|150052444 hsa-miR-608 1 1 0
chr5:150052157|150052444 hsa-miR-650 0 1 0
chr5:150052157|150052444 hsa-miR-711 0 1 0
chr5:150052157|150052444 hsa-miR-544b 0 1 0
chr5:150052157|150052444 hsa-miR-3154 1 0 0
chr5:150052157|150052444 hsa-miR-4319 0 1 0
chr5:150052157|150052444 hsa-miR-4271 0 1 0
chr5:150052157|150052444 hsa-miR-4281 1 0 0
chr5:150052157|150052444 hsa-miR-4277 0 1 0
chr5:150052157|150052444 hsa-miR-3649 0 1 0
chr5:150052157|150052444 hsa-miR-3917 1 0 0
chr5:150052157|150052444 hsa-miR-4450 0 1 0
chr5:150052157|150052444 hsa-miR-4512 0 1 0
chr5:150052157|150052444 hsa-miR-4526 1 0 0
chr5:150052157|150052444 hsa-miR-4648 0 1 0
chr5:150052157|150052444 hsa-miR-4710 0 1 0
chr5:150052157|150052444 hsa-miR-8052 1 1 0
chr5:150052157|150052444 hsa-miR-12127 1 0 0
chr5:150052157|150052444 hsa-miR-150-3p 1 0 0
chr5:150052157|150052444 hsa-miR-370-3p 1 0 0
chr5:150052157|150052444 hsa-miR-4433b-3p 0 1 0
chr5:150052157|150052444 hsa-miR-4731-5p 1 0 0
chr5:150052157|150052444 hsa-miR-3157-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4433a-3p 0 1 0
chr5:150052157|150052444 hsa-miR-6765-5p 1 0 0
chr5:150052157|150052444 hsa-miR-3150a-3p 1 1 0
chr5:150052157|150052444 hsa-miR-6825-5p 0 1 0
chr5:150052157|150052444 hsa-miR-4687-3p 1 1 0
chr5:150052157|150052444 hsa-miR-769-5p 0 1 0
chr5:150052157|150052444 hsa-miR-4709-3p 1 1 0
chr5:150052157|150052444 hsa-miR-4722-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4755-3p 0 1 0
chr5:150052157|150052444 hsa-miR-197-5p 1 0 0
chr5:150052157|150052444 hsa-miR-3180-3p 1 0 0
chr5:150052157|150052444 hsa-miR-877-3p 0 1 0
chr5:150052157|150052444 hsa-miR-185-3p 1 0 0
chr5:150052157|150052444 hsa-miR-6732-5p 1 0 0
chr5:150052157|150052444 hsa-miR-1224-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6760-5p 1 0 0
chr5:150052157|150052444 hsa-miR-2467-3p 1 0 0
chr5:150052157|150052444 hsa-miR-7109-3p 0 1 0
chr5:150052157|150052444 hsa-miR-615-5p 0 1 0
chr5:150052157|150052444 hsa-miR-1226-5p 1 0 0
chr5:150052157|150052444 hsa-miR-3944-3p 1 0 0
chr5:150052157|150052444 hsa-miR-1229-5p 1 0 0
chr5:150052157|150052444 hsa-miR-877-5p 1 1 0
chr5:150052157|150052444 hsa-miR-7854-3p 1 0 0
chr5:150052157|150052444 hsa-miR-4787-5p 1 0 0
chr5:150052157|150052444 hsa-miR-149-3p 1 1 0
chr5:150052157|150052444 hsa-miR-6824-5p 1 0 0
chr5:150052157|150052444 hsa-miR-7160-3p 0 1 0
chr5:150052157|150052444 hsa-miR-2115-5p 0 1 0
chr5:150052157|150052444 hsa-miR-3158-3p 0 1 0
chr5:150052157|150052444 hsa-miR-873-3p 1 0 0
chr5:150052157|150052444 hsa-miR-4649-3p 0 1 0
chr5:150052157|150052444 hsa-miR-670-5p 0 1 0
chr5:150052157|150052444 hsa-miR-5002-3p 1 0 0
chr5:150052157|150052444 hsa-let-7g-3p 0 1 0
chr5:150052157|150052444 hsa-miR-1273h-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4763-3p 1 0 0
chr5:150052157|150052444 hsa-miR-6787-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6865-5p 0 1 0
chr5:150052157|150052444 hsa-miR-6737-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6756-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6803-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6813-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6815-5p 0 1 0
chr5:150052157|150052444 hsa-miR-6819-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6842-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6851-5p 1 1 0
chr5:150052157|150052444 hsa-miR-11181-3p 1 0 0
chr5:150052157|150052444 hsa-miR-1249-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6722-3p 1 1 0
chr5:150052157|150052444 hsa-miR-6779-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6780a-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6808-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6875-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6780b-5p 1 0 0
chr5:150052157|150052444 hsa-miR-328-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4685-5p 1 1 0
chr5:150052157|150052444 hsa-miR-4725-3p 1 0 0
chr5:150052157|150052444 hsa-miR-4745-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4749-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6848-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6858-5p 1 0 0
chr5:150052157|150052444 hsa-miR-3199 1 1 0
chr5:150052157|150052444 hsa-miR-6511a-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6856-5p 1 0 0
chr5:150052157|150052444 hsa-miR-4665-5p 0 1 0
chr5:150052157|150052444 hsa-miR-6785-5p 1 1 0
chr5:150052157|150052444 hsa-miR-3184-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6724-5p 1 0 0
chr5:150052157|150052444 hsa-miR-6848-3p 0 1 0
chr5:150052157|150052444 hsa-miR-6764-5p 0 1 0
chr5:150052157|150052444 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:150052157|150052444
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MRTLGPTMLREWKLFGQSQQSEALPTGDHFCRSPG
Nucleotide Sequence CTGAGGACCCTGGGTCCCACCATGCTCAGGGAATGGAAGCTCTTTGGTCAGTCCCAGCAGTCAGAGGCCCTCCCCACAGGAGACCACTTCTGCAGGTCCCCTGGATAG
CircID chr5:150052157|150052444
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MVSPSSQRPSPQETTSAGPLDSSASGKGLTMA
Nucleotide Sequence TTGGTCAGTCCCAGCAGTCAGAGGCCCTCCCCACAGGAGACCACTTCTGCAGGTCCCCTGGATAGCTCTGCCTCAGGCAAGGGCCTTACTATGGCTTGA
CircID chr5:150052157|150052444
ORF Type ORF3
Protein Length 81
Nucleotide Length 243
Protein Sequence MVPLLTPGGLRTEDPGSHHAQGMEALWSVPAVRGPPHRRPLLQVPWIALPQARALLWLERWCSPCTTAWLILPLRPPPLPH
Nucleotide Sequence CTGGTACCACTCCTGACCCCTGGAGGGTTGAGAACTGAGGACCCTGGGTCCCACCATGCTCAGGGAATGGAAGCTCTTTGGTCAGTCCCAGCAGTCAGAGGCCCTCCCCACAGGAGACCACTTCTGCAGGTCCCCTGGATAGCTCTGCCTCAGGCAAGGGCCTTACTATGGCTTGAGAGATGGTGTAGTCCCTGTACAACAGCCTGGCTTATTCTGCCACTGCGGCCACCTCCTCTTCCTCAC
CircID chr5:150052157|150052444
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MLYRDYTISQAIVRPLPEAELSRGPAEVVSCGEGL
Nucleotide Sequence CTGTTGTACAGGGACTACACCATCTCTCAAGCCATAGTAAGGCCCTTGCCTGAGGCAGAGCTATCCAGGGGACCTGCAGAAGTGGTCTCCTGTGGGGAGGGCCTCTGA
CircID chr5:150052157|150052444
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MLGLTKELPFPEHGGTQGPQFSTLQGSGVVPGNLFWPRESTWGTRY
Nucleotide Sequence CTGCTGGGACTGACCAAAGAGCTTCCATTCCCTGAGCATGGTGGGACCCAGGGTCCTCAGTTCTCAACCCTCCAGGGGTCAGGAGTGGTACCAGGAAACCTCTTCTGGCCCCGAGAGAGCACTTGGGGGACACGGTAT
CircID chr5:150052157|150052444
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MSMVGPRVLSSQPSRGQEWYQETSSGPERALGGHG
Nucleotide Sequence CTGAGCATGGTGGGACCCAGGGTCCTCAGTTCTCAACCCTCCAGGGGTCAGGAGTGGTACCAGGAAACCTCTTCTGGCCCCGAGAGAGCACTTGGGGGACACGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab