CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150052398|150052534
Strand -
CircType exon
Host Gene ENSG00000113716.11;
Algorism CIRI2;
Sequence CAGGAAACCTCTTCTGGCCCCGAGAGAGCACTTGGGGGACACGGTATGTTTAATGGAGGGGAGGCTGAGGGAAAGGCTCGTAGCTGGTGGGTTCCGTGGGGCCTGCGGTGTGGGTCAGGGTGGAGGTCCTGGGTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150052398|150052534 hsa-miR-136-5p 0 0 1
chr5:150052398|150052534 hsa-miR-136-3p 0 0 1
chr5:150052398|150052534 hsa-miR-302a-5p 0 0 1
chr5:150052398|150052534 hsa-miR-302a-3p 0 0 1
chr5:150052398|150052534 hsa-miR-302b-5p 0 0 1
chr5:150052398|150052534 hsa-miR-302b-3p 0 0 1
chr5:150052398|150052534 hsa-miR-302c-5p 0 0 1
chr5:150052398|150052534 hsa-miR-302c-3p 0 0 1
chr5:150052398|150052534 hsa-miR-302d-5p 0 0 1
chr5:150052398|150052534 hsa-miR-302d-3p 0 0 1
chr5:150052398|150052534 hsa-miR-372-5p 0 0 1
chr5:150052398|150052534 hsa-miR-372-3p 0 0 1
chr5:150052398|150052534 hsa-miR-373-5p 0 0 1
chr5:150052398|150052534 hsa-miR-373-3p 0 0 1
chr5:150052398|150052534 hsa-miR-520e-5p 0 0 1
chr5:150052398|150052534 hsa-miR-520e-3p 0 0 1
chr5:150052398|150052534 hsa-miR-520b-5p 0 0 1
chr5:150052398|150052534 hsa-miR-520b-3p 0 0 1
chr5:150052398|150052534 hsa-miR-1226-5p 0 0 1
chr5:150052398|150052534 hsa-miR-1226-3p 0 0 1
chr5:150052398|150052534 hsa-miR-302e 0 0 1
chr5:150052398|150052534 hsa-miR-361-3p 0 0 1
chr5:150052398|150052534 hsa-miR-885-5p 0 0 1
chr5:150052398|150052534 hsa-miR-520d-3p 0 0 1
chr5:150052398|150052534 hsa-miR-520a-3p 0 0 1
chr5:150052398|150052534 hsa-miR-520c-3p 0 0 1
chr5:150052398|150052534 hsa-miR-642 0 0 1
chr5:150052398|150052534 hsa-miR-220a 0 0 1
chr5:150052398|150052534 hsa-miR-346 1 0 0
chr5:150052398|150052534 hsa-miR-596 1 0 0
chr5:150052398|150052534 hsa-miR-665 1 0 0
chr5:150052398|150052534 hsa-miR-1470 1 0 0
chr5:150052398|150052534 hsa-miR-4512 1 0 0
chr5:150052398|150052534 hsa-miR-7703 1 0 0
chr5:150052398|150052534 hsa-miR-6749-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6840-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4665-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4726-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6836-3p 1 0 0
chr5:150052398|150052534 hsa-miR-874-5p 1 0 0
chr5:150052398|150052534 hsa-miR-4728-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6787-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6845-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4655-3p 1 0 0
chr5:150052398|150052534 hsa-miR-615-3p 1 0 0
chr5:150052398|150052534 hsa-miR-939-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4793-5p 1 0 0
chr5:150052398|150052534 hsa-miR-1908-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6803-3p 1 0 0
chr5:150052398|150052534 hsa-miR-7111-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4667-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4446-5p 1 0 0
chr5:150052398|150052534 hsa-miR-378a-5p 1 0 0
chr5:150052398|150052534 hsa-miR-339-5p 1 0 0
chr5:150052398|150052534 hsa-miR-4646-3p 1 0 0
chr5:150052398|150052534 hsa-miR-1237-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6887-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6778-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4749-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6795-3p 1 0 0
chr5:150052398|150052534 hsa-miR-3620-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4750-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6734-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6731-3p 1 0 0
chr5:150052398|150052534 hsa-miR-3127-3p 1 0 0
chr5:150052398|150052534 hsa-miR-4685-3p 1 0 0
chr5:150052398|150052534 hsa-miR-1915-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6836-5p 1 0 0
chr5:150052398|150052534 hsa-miR-6791-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6756-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6792-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6829-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6751-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6819-3p 1 0 0
chr5:150052398|150052534 hsa-miR-6823-3p 1 0 0
chr5:150052398|150052534 hsa-miR-1234-3p 1 0 0
chr5:150052398|150052534 hsa-miR-10397-5p 1 0 0
chr5:150052398|150052534 hsa-miR-412-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:150052398|150052534
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MFNGGEAEGKARSWWVPWGLRCGSGWRSWV
Nucleotide Sequence ATGTTTAATGGAGGGGAGGCTGAGGGAAAGGCTCGTAGCTGGTGGGTTCCGTGGGGCCTGCGGTGTGGGTCAGGGTGGAGGTCCTGGGTG
CircID chr5:150052398|150052534
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MAPREHLGDTVCLMEGRLRERLVAGGFRGACGVGQGGGPGW
Nucleotide Sequence CTGGCCCCGAGAGAGCACTTGGGGGACACGGTATGTTTAATGGAGGGGAGGCTGAGGGAAAGGCTCGTAGCTGGTGGGTTCCGTGGGGCCTGCGGTGTGGGTCAGGGTGGAGGTCCTGGGTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab