CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150399851|150400075
Strand -
CircType exon
Host Gene ENSG00000070814.16;
Algorism CIRI2;
Sequence CTCCACCGACCTCTGCCCACCATGGGTTGGAACTAAACTGTTACCTTCCCTCGCTCCACAGAAGAAGACAGCCAGCTTCAGGGGTCCCTGTGCTGGCCAAGCCAGTGAGCCTGCGGGGAGGCTGGTCCAAGGAGAAAGTGGACCAGCTCCCATGACCTCACCCCACTCCCCCAACACAGGACGCTTCATATAGATGTGTACAGTATATGTATTTTTTTAAGTGAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150399851|150400075 hsa-miR-212-5p 0 0 1
chr5:150399851|150400075 hsa-miR-212-3p 0 0 1
chr5:150399851|150400075 hsa-miR-132-5p 0 0 1
chr5:150399851|150400075 hsa-miR-132-3p 0 0 1
chr5:150399851|150400075 hsa-miR-484 0 0 1
chr5:150399851|150400075 hsa-miR-588 0 0 1
chr5:150399851|150400075 hsa-miR-608 0 0 1
chr5:150399851|150400075 hsa-miR-625-5p 0 0 1
chr5:150399851|150400075 hsa-miR-625-3p 0 0 1
chr5:150399851|150400075 hsa-miR-626 0 0 1
chr5:150399851|150400075 hsa-miR-892b 0 0 1
chr5:150399851|150400075 hsa-miR-541-5p 0 0 1
chr5:150399851|150400075 hsa-miR-541-3p 0 0 1
chr5:150399851|150400075 hsa-miR-920 0 0 1
chr5:150399851|150400075 hsa-miR-1183 1 0 1
chr5:150399851|150400075 hsa-miR-1294 0 0 1
chr5:150399851|150400075 hsa-miR-1275 0 0 1
chr5:150399851|150400075 hsa-miR-127-5p 0 0 1
chr5:150399851|150400075 hsa-miR-654-5p 0 0 1
chr5:150399851|150400075 hsa-miR-342-5p 0 0 1
chr5:150399851|150400075 hsa-miR-220c 0 0 1
chr5:150399851|150400075 hsa-miR-1308 0 0 1
chr5:150399851|150400075 hsa-miR-194 0 0 1
chr5:150399851|150400075 hsa-miR-1259 0 0 1
chr5:150399851|150400075 hsa-miR-3147 1 0 0
chr5:150399851|150400075 hsa-miR-4651 1 0 0
chr5:150399851|150400075 hsa-miR-4669 1 0 0
chr5:150399851|150400075 hsa-miR-4739 1 0 0
chr5:150399851|150400075 hsa-miR-5698 1 0 0
chr5:150399851|150400075 hsa-miR-6090 1 0 0
chr5:150399851|150400075 hsa-miR-6127 1 0 0
chr5:150399851|150400075 hsa-miR-8060 1 0 0
chr5:150399851|150400075 hsa-miR-12115 1 0 0
chr5:150399851|150400075 hsa-miR-6765-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4687-3p 1 0 0
chr5:150399851|150400075 hsa-miR-6720-5p 1 0 0
chr5:150399851|150400075 hsa-miR-7114-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6089 1 0 0
chr5:150399851|150400075 hsa-miR-7847-3p 1 0 0
chr5:150399851|150400075 hsa-miR-6782-5p 1 0 0
chr5:150399851|150400075 hsa-miR-1226-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4640-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6824-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4800-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4714-3p 1 0 0
chr5:150399851|150400075 hsa-miR-6870-5p 1 0 0
chr5:150399851|150400075 hsa-miR-1343-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6726-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6752-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6756-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6803-5p 1 0 0
chr5:150399851|150400075 hsa-miR-7110-5p 1 0 0
chr5:150399851|150400075 hsa-miR-10401-5p 1 0 0
chr5:150399851|150400075 hsa-miR-1249-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6797-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6879-5p 1 0 0
chr5:150399851|150400075 hsa-miR-5196-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6780b-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4649-5p 1 0 0
chr5:150399851|150400075 hsa-miR-4725-3p 1 0 0
chr5:150399851|150400075 hsa-miR-4745-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6729-5p 1 0 0
chr5:150399851|150400075 hsa-miR-6848-5p 1 0 0
chr5:150399851|150400075 hsa-miR-939-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:150399851|150400075
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MLPSLAPQKKTASFRGPCAGQASEPAGRLVQGESGPAPMTSPHSPNTGRFI
Nucleotide Sequence CTGTTACCTTCCCTCGCTCCACAGAAGAAGACAGCCAGCTTCAGGGGTCCCTGTGCTGGCCAAGCCAGTGAGCCTGCGGGGAGGCTGGTCCAAGGAGAAAGTGGACCAGCTCCCATGACCTCACCCCACTCCCCCAACACAGGACGCTTCATATAG
CircID chr5:150399851|150400075
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MELNCYLPSLHRRRQPASGVPVLAKPVSLRGGWSKEKVDQLP
Nucleotide Sequence TTGGAACTAAACTGTTACCTTCCCTCGCTCCACAGAAGAAGACAGCCAGCTTCAGGGGTCCCTGTGCTGGCCAAGCCAGTGAGCCTGCGGGGAGGCTGGTCCAAGGAGAAAGTGGACCAGCTCCCATGA
CircID chr5:150399851|150400075
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MKRPVLGEWGEVMGAGPLSPWTSLPAGSLAWPAQGPLKLAVFFCGAREGNSLVPTHGGQRSVE
Nucleotide Sequence ATGAAGCGTCCTGTGTTGGGGGAGTGGGGTGAGGTCATGGGAGCTGGTCCACTTTCTCCTTGGACCAGCCTCCCCGCAGGCTCACTGGCTTGGCCAGCACAGGGACCCCTGAAGCTGGCTGTCTTCTTCTGTGGAGCGAGGGAAGGTAACAGTTTAGTTCCAACCCATGGTGGGCAGAGGTCGGTGGAG
CircID chr5:150399851|150400075
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MCWGSGVRSWELVHFLLGPASPQAHWLGQHRDP
Nucleotide Sequence CTGTGTTGGGGGAGTGGGGTGAGGTCATGGGAGCTGGTCCACTTTCTCCTTGGACCAGCCTCCCCGCAGGCTCACTGGCTTGGCCAGCACAGGGACCCCTGA
CircID chr5:150399851|150400075
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MDQPPRRLTGLASTGTPEAGCLLLWSEGR
Nucleotide Sequence TTGGACCAGCCTCCCCGCAGGCTCACTGGCTTGGCCAGCACAGGGACCCCTGAAGCTGGCTGTCTTCTTCTGTGGAGCGAGGGAAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab