CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150401716|150401871
Strand -
CircType exon
Host Gene ENSG00000019582.13;
Algorism CIRI2;
Sequence TAGGGGTCGGCAGAAAGGATTATGGGTGGAAAACATTGGCTCTTCCTTGGGGAGTGATGCTGGGGAAAGGGAAGAGAGTGGCTCAGCCTGCAGGTAAATAGGCTAGAAAAGCCAAGGCCAAAGGCTGGAGGGGAGAGGACAGTCAGCATGTCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150401716|150401871 hsa-miR-204-5p 0 0 1
chr5:150401716|150401871 hsa-miR-204-3p 0 0 1
chr5:150401716|150401871 hsa-miR-211-5p 0 0 1
chr5:150401716|150401871 hsa-miR-211-3p 0 0 1
chr5:150401716|150401871 hsa-miR-623 0 0 1
chr5:150401716|150401871 hsa-miR-766-5p 0 0 1
chr5:150401716|150401871 hsa-miR-766-3p 0 0 1
chr5:150401716|150401871 hsa-miR-943 1 1 1
chr5:150401716|150401871 hsa-miR-1236-5p 0 0 1
chr5:150401716|150401871 hsa-miR-1236-3p 0 0 1
chr5:150401716|150401871 hsa-miR-1205 0 0 1
chr5:150401716|150401871 hsa-miR-501-5p 0 0 1
chr5:150401716|150401871 hsa-miR-628-5p 0 0 1
chr5:150401716|150401871 hsa-miR-338-3p 0 1 1
chr5:150401716|150401871 hsa-miR-483-3p 0 0 1
chr5:150401716|150401871 hsa-miR-500 0 0 1
chr5:150401716|150401871 hsa-miR-544 0 0 1
chr5:150401716|150401871 hsa-miR-612 1 0 0
chr5:150401716|150401871 hsa-miR-657 1 0 0
chr5:150401716|150401871 hsa-miR-940 1 0 0
chr5:150401716|150401871 hsa-miR-3909 1 0 0
chr5:150401716|150401871 hsa-miR-4478 0 1 0
chr5:150401716|150401871 hsa-miR-4734 1 0 0
chr5:150401716|150401871 hsa-miR-4791 0 1 0
chr5:150401716|150401871 hsa-miR-212-5p 0 1 0
chr5:150401716|150401871 hsa-miR-6875-3p 1 0 0
chr5:150401716|150401871 hsa-miR-33a-3p 0 1 0
chr5:150401716|150401871 hsa-miR-6849-3p 0 1 0
chr5:150401716|150401871 hsa-miR-4728-3p 1 1 0
chr5:150401716|150401871 hsa-miR-7110-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6845-3p 1 1 0
chr5:150401716|150401871 hsa-miR-877-3p 0 1 0
chr5:150401716|150401871 hsa-miR-4753-3p 1 1 0
chr5:150401716|150401871 hsa-miR-6728-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6882-3p 0 1 0
chr5:150401716|150401871 hsa-miR-6740-3p 1 1 0
chr5:150401716|150401871 hsa-miR-939-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6763-3p 1 0 0
chr5:150401716|150401871 hsa-miR-3944-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6821-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6809-3p 1 1 0
chr5:150401716|150401871 hsa-miR-7111-3p 1 1 0
chr5:150401716|150401871 hsa-miR-4638-3p 1 0 0
chr5:150401716|150401871 hsa-miR-4446-5p 1 0 0
chr5:150401716|150401871 hsa-miR-6769a-3p 1 0 0
chr5:150401716|150401871 hsa-miR-339-5p 1 0 0
chr5:150401716|150401871 hsa-miR-4646-3p 1 0 0
chr5:150401716|150401871 hsa-miR-4776-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6743-3p 1 1 0
chr5:150401716|150401871 hsa-miR-6887-3p 0 1 0
chr5:150401716|150401871 hsa-miR-208a-5p 0 1 0
chr5:150401716|150401871 hsa-miR-6741-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6814-5p 0 1 0
chr5:150401716|150401871 hsa-miR-4632-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6777-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6794-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6760-3p 1 1 0
chr5:150401716|150401871 hsa-miR-3124-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6883-3p 1 0 0
chr5:150401716|150401871 hsa-miR-130b-5p 1 0 0
chr5:150401716|150401871 hsa-miR-1255b-2-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6812-3p 1 0 0
chr5:150401716|150401871 hsa-miR-4668-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6731-3p 1 0 0
chr5:150401716|150401871 hsa-miR-320a-5p 1 0 0
chr5:150401716|150401871 hsa-miR-4685-3p 1 1 0
chr5:150401716|150401871 hsa-miR-4755-5p 0 1 0
chr5:150401716|150401871 hsa-miR-6852-3p 0 1 0
chr5:150401716|150401871 hsa-miR-6862-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6751-3p 1 1 0
chr5:150401716|150401871 hsa-miR-6823-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6876-3p 1 0 0
chr5:150401716|150401871 hsa-miR-5006-3p 1 1 0
chr5:150401716|150401871 hsa-miR-6833-3p 1 0 0
chr5:150401716|150401871 hsa-miR-6766-3p 1 1 0
chr5:150401716|150401871 hsa-miR-135b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:150401716|150401871
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MQAEPLSSLSPASLPKEEPMFSTHNPFCRPL
Nucleotide Sequence CTGCAGGCTGAGCCACTCTCTTCCCTTTCCCCAGCATCACTCCCCAAGGAAGAGCCAATGTTTTCCACCCATAATCCTTTCTGCCGACCCCTA
CircID chr5:150401716|150401871
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence LDMLTVLSPPAFGLGFSSLFTCRLSHSLPFPQHHSPRKSQCFPPIILSADP
Nucleotide Sequence CTGGACATGCTGACTGTCCTCTCCCCTCCAGCCTTTGGCCTTGGCTTTTCTAGCCTATTTACCTGCAGGCTGAGCCACTCTCTTCCCTTTCCCCAGCATCACTCCCCAAGGAAGAGCCAATGTTTTCCACCCATAATCCTTTCTGCCGACCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab