CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150618295|150618397
Strand -
CircType exon
Host Gene ENSG00000171992.11;
Algorism CIRI2;
Sequence AGCTGGCCCCAGCCCAGGCCCTGGCCCAGGCCCAGGAGCCTGCTTCCCTGCATCGCTGAGGAAGAACAGCACCATGCTGGGTCCTCACCTCCCACCTCCGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150618295|150618397 hsa-miR-484 0 0 1
chr5:150618295|150618397 hsa-miR-661 1 1 1
chr5:150618295|150618397 hsa-miR-658 1 1 1
chr5:150618295|150618397 hsa-miR-1224-5p 0 1 1
chr5:150618295|150618397 hsa-miR-338-3p 0 1 1
chr5:150618295|150618397 hsa-miR-762 1 1 0
chr5:150618295|150618397 hsa-miR-2861 0 1 0
chr5:150618295|150618397 hsa-miR-3918 0 1 0
chr5:150618295|150618397 hsa-miR-378g 0 1 0
chr5:150618295|150618397 hsa-miR-3689c 1 1 0
chr5:150618295|150618397 hsa-miR-1587 0 1 0
chr5:150618295|150618397 hsa-miR-4651 1 0 0
chr5:150618295|150618397 hsa-miR-4710 0 1 0
chr5:150618295|150618397 hsa-miR-4751 0 1 0
chr5:150618295|150618397 hsa-miR-5787 1 1 0
chr5:150618295|150618397 hsa-miR-6069 0 1 0
chr5:150618295|150618397 hsa-miR-6134 0 1 0
chr5:150618295|150618397 hsa-miR-7106-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6825-5p 1 1 0
chr5:150618295|150618397 hsa-miR-6799-5p 1 1 0
chr5:150618295|150618397 hsa-miR-1227-5p 0 1 0
chr5:150618295|150618397 hsa-miR-6880-5p 1 0 0
chr5:150618295|150618397 hsa-miR-7847-3p 1 0 0
chr5:150618295|150618397 hsa-miR-6742-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6748-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6782-5p 1 0 0
chr5:150618295|150618397 hsa-miR-7855-5p 1 0 0
chr5:150618295|150618397 hsa-miR-30b-3p 0 1 0
chr5:150618295|150618397 hsa-miR-939-3p 0 1 0
chr5:150618295|150618397 hsa-miR-7109-5p 1 1 0
chr5:150618295|150618397 hsa-miR-4640-5p 1 1 0
chr5:150618295|150618397 hsa-miR-4690-5p 0 1 0
chr5:150618295|150618397 hsa-miR-3677-3p 1 0 0
chr5:150618295|150618397 hsa-miR-6749-5p 1 1 0
chr5:150618295|150618397 hsa-miR-7854-3p 0 1 0
chr5:150618295|150618397 hsa-miR-149-3p 1 0 0
chr5:150618295|150618397 hsa-miR-6717-5p 0 1 0
chr5:150618295|150618397 hsa-miR-1207-5p 1 0 0
chr5:150618295|150618397 hsa-miR-1233-5p 1 1 0
chr5:150618295|150618397 hsa-miR-1273h-5p 0 1 0
chr5:150618295|150618397 hsa-miR-3689b-3p 1 1 0
chr5:150618295|150618397 hsa-miR-4763-3p 1 1 0
chr5:150618295|150618397 hsa-miR-6769b-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6778-5p 1 1 0
chr5:150618295|150618397 hsa-miR-6787-5p 1 0 0
chr5:150618295|150618397 hsa-miR-1343-5p 1 1 0
chr5:150618295|150618397 hsa-miR-5001-5p 0 1 0
chr5:150618295|150618397 hsa-miR-6726-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6752-5p 1 1 0
chr5:150618295|150618397 hsa-miR-6756-5p 1 1 0
chr5:150618295|150618397 hsa-miR-6769a-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6803-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6851-5p 1 1 0
chr5:150618295|150618397 hsa-miR-7110-5p 1 0 0
chr5:150618295|150618397 hsa-miR-1249-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6722-3p 1 0 0
chr5:150618295|150618397 hsa-miR-6751-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6779-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6780a-5p 1 1 0
chr5:150618295|150618397 hsa-miR-7111-5p 1 0 0
chr5:150618295|150618397 hsa-miR-3620-5p 1 1 0
chr5:150618295|150618397 hsa-miR-4728-5p 1 0 0
chr5:150618295|150618397 hsa-miR-3689a-3p 1 1 0
chr5:150618295|150618397 hsa-miR-4685-5p 1 1 0
chr5:150618295|150618397 hsa-miR-4726-5p 0 1 0
chr5:150618295|150618397 hsa-miR-4749-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6729-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6848-5p 1 0 0
chr5:150618295|150618397 hsa-miR-939-5p 1 1 0
chr5:150618295|150618397 hsa-miR-3940-5p 0 1 0
chr5:150618295|150618397 hsa-miR-3689d 0 1 0
chr5:150618295|150618397 hsa-miR-6724-5p 1 0 0
chr5:150618295|150618397 hsa-miR-6791-5p 0 1 0
chr5:150618295|150618397 hsa-miR-6837-5p 0 1 0
chr5:150618295|150618397 hsa-miR-6783-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:150618295|150618397
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MVLFFLSDAGKQAPGPGPGPGLGPA
Nucleotide Sequence ATGGTGCTGTTCTTCCTCAGCGATGCAGGGAAGCAGGCTCCTGGGCCTGGGCCAGGGCCTGGGCTGGGGCCAGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab