CircRNA Information

General Information
circRNA Basic Information
CircID chr5:150649200|150649469
Strand +
CircType exon
Host Gene ENSG00000171992.11;
Algorism CIRI2;
Sequence CAGATCCAGCAAGTCTGGATTCGGGGTCACCTTGGGCTTCTCCACGAAAGTAAACATGGATTTGCGGCTGCCCCGGCGGGCCATCGACTCCTCCAGAATGCCCGTCTTGCTGGCAGGAACCGCCTGGCCCTTCAGATGAGAAGACTTGGGGTCGGAGCTGGGATACAGGACAGAATATGAGGGAGGAGACCTCACCCAGGAAGCCAGAGGGGCTGTGGACAAGGTCTCAGTGTAGGTGGGGGGTGCAGTGAAGTTCCCCAAGGGGCGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:150649200|150649469 hsa-miR-149-5p 0 0 1
chr5:150649200|150649469 hsa-miR-149-3p 0 0 1
chr5:150649200|150649469 hsa-miR-1264 0 0 1
chr5:150649200|150649469 hsa-miR-765 0 0 1
chr5:150649200|150649469 hsa-miR-942-5p 0 0 1
chr5:150649200|150649469 hsa-miR-942-3p 0 0 1
chr5:150649200|150649469 hsa-miR-1202 1 0 1
chr5:150649200|150649469 hsa-miR-1287-5p 0 0 1
chr5:150649200|150649469 hsa-miR-1287-3p 0 0 1
chr5:150649200|150649469 hsa-miR-1294 0 0 1
chr5:150649200|150649469 hsa-miR-1299 0 0 1
chr5:150649200|150649469 hsa-miR-1262 0 0 1
chr5:150649200|150649469 hsa-miR-1279 0 0 1
chr5:150649200|150649469 hsa-miR-486-5p 1 0 1
chr5:150649200|150649469 hsa-miR-769-5p 0 0 1
chr5:150649200|150649469 hsa-miR-486-3p 0 0 1
chr5:150649200|150649469 hsa-miR-1224-3p 0 0 1
chr5:150649200|150649469 hsa-miR-483-5p 0 0 1
chr5:150649200|150649469 hsa-miR-516a-3p 0 0 1
chr5:150649200|150649469 hsa-miR-516b 0 0 1
chr5:150649200|150649469 hsa-miR-663a 1 0 0
chr5:150649200|150649469 hsa-miR-1538 1 0 0
chr5:150649200|150649469 hsa-miR-718 1 0 0
chr5:150649200|150649469 hsa-miR-2861 1 0 0
chr5:150649200|150649469 hsa-miR-3196 1 0 0
chr5:150649200|150649469 hsa-miR-3945 1 0 0
chr5:150649200|150649469 hsa-miR-4526 1 0 0
chr5:150649200|150649469 hsa-miR-3972 1 0 0
chr5:150649200|150649469 hsa-miR-4688 1 0 0
chr5:150649200|150649469 hsa-miR-5090 1 0 0
chr5:150649200|150649469 hsa-miR-6749-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6836-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6720-5p 1 0 0
chr5:150649200|150649469 hsa-miR-210-5p 1 0 0
chr5:150649200|150649469 hsa-miR-1227-5p 1 0 0
chr5:150649200|150649469 hsa-miR-1225-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6727-5p 1 0 0
chr5:150649200|150649469 hsa-miR-3189-5p 1 0 0
chr5:150649200|150649469 hsa-miR-6845-3p 1 0 0
chr5:150649200|150649469 hsa-miR-3180-3p 1 0 0
chr5:150649200|150649469 hsa-miR-4655-3p 1 0 0
chr5:150649200|150649469 hsa-miR-4707-3p 1 0 0
chr5:150649200|150649469 hsa-miR-4640-5p 1 0 0
chr5:150649200|150649469 hsa-miR-6757-3p 1 0 0
chr5:150649200|150649469 hsa-miR-7111-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6739-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6786-3p 1 0 0
chr5:150649200|150649469 hsa-miR-7112-5p 1 0 0
chr5:150649200|150649469 hsa-miR-4758-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6795-3p 1 0 0
chr5:150649200|150649469 hsa-miR-4649-3p 1 0 0
chr5:150649200|150649469 hsa-miR-3162-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6816-5p 1 0 0
chr5:150649200|150649469 hsa-miR-6775-5p 1 0 0
chr5:150649200|150649469 hsa-miR-6743-5p 1 0 0
chr5:150649200|150649469 hsa-miR-4685-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6754-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6862-5p 1 0 0
chr5:150649200|150649469 hsa-miR-10392-5p 1 0 0
chr5:150649200|150649469 hsa-miR-328-5p 1 0 0
chr5:150649200|150649469 hsa-miR-3187-5p 1 0 0
chr5:150649200|150649469 hsa-miR-1199-5p 1 0 0
chr5:150649200|150649469 hsa-miR-324-3p 1 0 0
chr5:150649200|150649469 hsa-miR-6775-3p 1 0 0
chr5:150649200|150649469 hsa-miR-10392-3p 1 0 0
chr5:150649200|150649469 hsa-miR-4723-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:150649200|150649469
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MGFSTKVNMDLRLPRRAIDSSRMPVLLAGTAWPFR
Nucleotide Sequence TTGGGCTTCTCCACGAAAGTAAACATGGATTTGCGGCTGCCCCGGCGGGCCATCGACTCCTCCAGAATGCCCGTCTTGCTGGCAGGAACCGCCTGGCCCTTCAGATGA
CircID chr5:150649200|150649469
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGSELGYRTEYEGGDLTQEARGAVDKVSV
Nucleotide Sequence TTGGGGTCGGAGCTGGGATACAGGACAGAATATGAGGGAGGAGACCTCACCCAGGAAGCCAGAGGGGCTGTGGACAAGGTCTCAGTGTAG
CircID chr5:150649200|150649469
ORF Type ORF3
Protein Length 87
Nucleotide Length 261
Protein Sequence MGNFTAPPTYTETLSTAPLASWVRSPPSYSVLYPSSDPKSSHLKGQAVPASKTGILEESMARRGSRKSMFTFVEKPKVTPNPDLLDL
Nucleotide Sequence TTGGGGAACTTCACTGCACCCCCCACCTACACTGAGACCTTGTCCACAGCCCCTCTGGCTTCCTGGGTGAGGTCTCCTCCCTCATATTCTGTCCTGTATCCCAGCTCCGACCCCAAGTCTTCTCATCTGAAGGGCCAGGCGGTTCCTGCCAGCAAGACGGGCATTCTGGAGGAGTCGATGGCCCGCCGGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAGCCCAAGGTGACCCCGAATCCAGACTTGCTGGATCTG
CircID chr5:150649200|150649469
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MPARRAFWRSRWPAGAAANPCLLSWRSPR
Nucleotide Sequence CTGCCAGCAAGACGGGCATTCTGGAGGAGTCGATGGCCCGCCGGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAGCCCAAGGTGA
CircID chr5:150649200|150649469
ORF Type ORF5
Protein Length 66
Nucleotide Length 198
Protein Sequence MGEVSSLIFCPVSQLRPQVFSSEGPGGSCQQDGHSGGVDGPPGQPQIHVYFRGEAQGDPESRLAGS
Nucleotide Sequence CTGGGTGAGGTCTCCTCCCTCATATTCTGTCCTGTATCCCAGCTCCGACCCCAAGTCTTCTCATCTGAAGGGCCAGGCGGTTCCTGCCAGCAAGACGGGCATTCTGGAGGAGTCGATGGCCCGCCGGGGCAGCCGCAAATCCATGTTTACTTTCGTGGAGAAGCCCAAGGTGACCCCGAATCCAGACTTGCTGGATCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab