CircRNA Information

General Information
circRNA Basic Information
CircID chr5:154417624|154417792
Strand +
CircType exon
Host Gene ENSG00000164574.14;
Algorism CIRI2;
Sequence CTGGCCTTTTCCGTGGGCTCAGGGCCATCTGAAACACTGCCCTGTAAAGCTGGTGCTGGGCTGTCCTTGTGCCTGGAGAGTGCTAAAATTGACATTTCAAATACCCAGAGAGCAGGGGGAGATATCCCGCATGTCCATAGCTGCAAAGAAATGTCTAGGGGGGCTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:154417624|154417792 hsa-miR-29a-5p 0 0 1
chr5:154417624|154417792 hsa-miR-29a-3p 0 0 1
chr5:154417624|154417792 hsa-miR-34a-5p 0 0 1
chr5:154417624|154417792 hsa-miR-34a-3p 0 0 1
chr5:154417624|154417792 hsa-miR-29c-5p 0 0 1
chr5:154417624|154417792 hsa-miR-29c-3p 0 0 1
chr5:154417624|154417792 hsa-miR-328-5p 0 0 1
chr5:154417624|154417792 hsa-miR-328-3p 0 0 1
chr5:154417624|154417792 hsa-miR-326 0 0 1
chr5:154417624|154417792 hsa-miR-449a 0 1 1
chr5:154417624|154417792 hsa-miR-449b-5p 0 0 1
chr5:154417624|154417792 hsa-miR-449b-3p 0 0 1
chr5:154417624|154417792 hsa-miR-1301-5p 0 0 1
chr5:154417624|154417792 hsa-miR-1301-3p 0 0 1
chr5:154417624|154417792 hsa-miR-766-5p 0 0 1
chr5:154417624|154417792 hsa-miR-766-3p 0 0 1
chr5:154417624|154417792 hsa-miR-1226-5p 0 0 1
chr5:154417624|154417792 hsa-miR-1226-3p 0 0 1
chr5:154417624|154417792 hsa-miR-1291 0 1 1
chr5:154417624|154417792 hsa-miR-1225-3p 0 0 1
chr5:154417624|154417792 hsa-miR-125a-5p 0 0 1
chr5:154417624|154417792 hsa-miR-330-5p 0 0 1
chr5:154417624|154417792 hsa-miR-34c-5p 0 1 1
chr5:154417624|154417792 hsa-miR-590-3p 0 0 1
chr5:154417624|154417792 hsa-miR-1233 0 0 1
chr5:154417624|154417792 hsa-miR-125b 0 0 1
chr5:154417624|154417792 hsa-miR-203 0 0 1
chr5:154417624|154417792 hsa-miR-29b 0 0 1
chr5:154417624|154417792 hsa-miR-612 1 0 0
chr5:154417624|154417792 hsa-miR-760 0 1 0
chr5:154417624|154417792 hsa-miR-4269 1 1 0
chr5:154417624|154417792 hsa-miR-3943 0 1 0
chr5:154417624|154417792 hsa-miR-4457 0 1 0
chr5:154417624|154417792 hsa-miR-4673 0 1 0
chr5:154417624|154417792 hsa-miR-4688 1 0 0
chr5:154417624|154417792 hsa-miR-5047 0 1 0
chr5:154417624|154417792 hsa-miR-5685 0 1 0
chr5:154417624|154417792 hsa-miR-8080 0 1 0
chr5:154417624|154417792 hsa-miR-6861-5p 1 0 0
chr5:154417624|154417792 hsa-miR-593-5p 1 0 0
chr5:154417624|154417792 hsa-miR-6727-5p 1 0 0
chr5:154417624|154417792 hsa-miR-770-5p 1 1 0
chr5:154417624|154417792 hsa-miR-1229-5p 1 0 0
chr5:154417624|154417792 hsa-miR-3065-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6499-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6778-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6856-3p 0 1 0
chr5:154417624|154417792 hsa-miR-29b-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6743-5p 1 0 0
chr5:154417624|154417792 hsa-miR-4632-5p 0 1 0
chr5:154417624|154417792 hsa-miR-7843-5p 0 1 0
chr5:154417624|154417792 hsa-miR-6862-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6801-3p 0 1 0
chr5:154417624|154417792 hsa-miR-6810-3p 0 1 0
chr5:154417624|154417792 hsa-miR-9851-3p 1 0 0
chr5:154417624|154417792 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:154417624|154417792
ORF Type ORF1
Protein Length 56
Nucleotide Length 168
Protein Sequence LAFSVGSGPSETLPCKAGAGLSLCLESAKIDISNTQRAGGDIPHVHSCKEMSRGAP
Nucleotide Sequence CTGGCCTTTTCCGTGGGCTCAGGGCCATCTGAAACACTGCCCTGTAAAGCTGGTGCTGGGCTGTCCTTGTGCCTGGAGAGTGCTAAAATTGACATTTCAAATACCCAGAGAGCAGGGGGAGATATCCCGCATGTCCATAGCTGCAAAGAAATGTCTAGGGGGGCTCCC
CircID chr5:154417624|154417792
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MKHCPVKLVLGCPCAWRVLKLTFQIPREQGEISRMSIAAKKCLGGLP
Nucleotide Sequence CTGAAACACTGCCCTGTAAAGCTGGTGCTGGGCTGTCCTTGTGCCTGGAGAGTGCTAAAATTGACATTTCAAATACCCAGAGAGCAGGGGGAGATATCCCGCATGTCCATAGCTGCAAAGAAATGTCTAGGGGGGCTCCCT
CircID chr5:154417624|154417792
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MQLWTCGISPPALWVFEMSILALSRHKDSPAPALQGSVSDGPEPTEKA
Nucleotide Sequence TTGCAGCTATGGACATGCGGGATATCTCCCCCTGCTCTCTGGGTATTTGAAATGTCAATTTTAGCACTCTCCAGGCACAAGGACAGCCCAGCACCAGCTTTACAGGGCAGTGTTTCAGATGGCCCTGAGCCCACGGAAAAGGCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab