CircRNA Information

General Information
circRNA Basic Information
CircID chr5:154814486|154814640
Strand -
CircType exon
Host Gene ENSG00000155506.15;
Algorism CIRI2;
Sequence CTCCTGCTCCCCCTCAAGCCAACTATGCAGCCCACAAGAAGGCCCTGCGGGCCCCCCCATTGCCCAGCACTGTCTCATAGAAGGCTCTGGTGGTACCTCTGGGCCCCAGGAGCATCAGCCCCTTGATCATCTGGGGTTTGTCATCACCATATTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:154814486|154814640 hsa-miR-578 0 0 1
chr5:154814486|154814640 hsa-miR-581 0 0 1
chr5:154814486|154814640 hsa-miR-612 0 0 1
chr5:154814486|154814640 hsa-miR-939-5p 0 0 1
chr5:154814486|154814640 hsa-miR-939-3p 0 0 1
chr5:154814486|154814640 hsa-miR-1248 0 1 1
chr5:154814486|154814640 hsa-miR-512-3p 0 0 1
chr5:154814486|154814640 hsa-miR-423-5p 0 0 1
chr5:154814486|154814640 hsa-miR-153 0 0 1
chr5:154814486|154814640 hsa-miR-1285 0 0 1
chr5:154814486|154814640 hsa-miR-638 1 0 0
chr5:154814486|154814640 hsa-miR-663a 1 0 0
chr5:154814486|154814640 hsa-miR-762 1 0 0
chr5:154814486|154814640 hsa-miR-2861 1 0 0
chr5:154814486|154814640 hsa-miR-3147 1 1 0
chr5:154814486|154814640 hsa-miR-3196 1 0 0
chr5:154814486|154814640 hsa-miR-4296 1 0 0
chr5:154814486|154814640 hsa-miR-4322 1 0 0
chr5:154814486|154814640 hsa-miR-4259 1 0 0
chr5:154814486|154814640 hsa-miR-4265 1 0 0
chr5:154814486|154814640 hsa-miR-4498 1 0 0
chr5:154814486|154814640 hsa-miR-4507 1 0 0
chr5:154814486|154814640 hsa-miR-1587 1 1 0
chr5:154814486|154814640 hsa-miR-4656 1 1 0
chr5:154814486|154814640 hsa-miR-4741 1 0 0
chr5:154814486|154814640 hsa-miR-6860 0 1 0
chr5:154814486|154814640 hsa-miR-8075 0 1 0
chr5:154814486|154814640 hsa-miR-6734-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6861-5p 1 1 0
chr5:154814486|154814640 hsa-miR-1227-5p 0 1 0
chr5:154814486|154814640 hsa-miR-4695-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6759-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6716-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6793-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6796-5p 1 0 0
chr5:154814486|154814640 hsa-miR-185-3p 0 1 0
chr5:154814486|154814640 hsa-miR-6829-5p 1 0 0
chr5:154814486|154814640 hsa-miR-1343-3p 0 1 0
chr5:154814486|154814640 hsa-miR-6852-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6823-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6749-5p 1 0 0
chr5:154814486|154814640 hsa-miR-1245b-3p 0 1 0
chr5:154814486|154814640 hsa-miR-6870-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6775-5p 1 0 0
chr5:154814486|154814640 hsa-miR-5001-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6813-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6722-3p 1 0 0
chr5:154814486|154814640 hsa-miR-3620-5p 1 1 0
chr5:154814486|154814640 hsa-miR-5189-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6836-5p 1 1 0
chr5:154814486|154814640 hsa-miR-328-5p 1 1 0
chr5:154814486|154814640 hsa-miR-4649-5p 1 0 0
chr5:154814486|154814640 hsa-miR-4685-5p 1 1 0
chr5:154814486|154814640 hsa-miR-6794-5p 0 1 0
chr5:154814486|154814640 hsa-miR-6846-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6848-5p 1 0 0
chr5:154814486|154814640 hsa-miR-3187-5p 0 1 0
chr5:154814486|154814640 hsa-miR-4723-5p 0 1 0
chr5:154814486|154814640 hsa-miR-4769-5p 1 0 0
chr5:154814486|154814640 hsa-miR-6724-5p 1 0 0
chr5:154814486|154814640 hsa-miR-10400-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:154814486|154814640
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MLPLKPTMQPTRRPCGPPHCPALSHRRLWWYLWAPGASAP
Nucleotide Sequence CTGCTCCCCCTCAAGCCAACTATGCAGCCCACAAGAAGGCCCTGCGGGCCCCCCCATTGCCCAGCACTGTCTCATAGAAGGCTCTGGTGGTACCTCTGGGCCCCAGGAGCATCAGCCCCTTGA
CircID chr5:154814486|154814640
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MIKGLMLLGPRGTTRAFYETVLGNGGARRAFLWAA
Nucleotide Sequence ATGATCAAGGGGCTGATGCTCCTGGGGCCCAGAGGTACCACCAGAGCCTTCTATGAGACAGTGCTGGGCAATGGGGGGGCCCGCAGGGCCTTCTTGTGGGCTGCATAG
CircID chr5:154814486|154814640
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MRQCWAMGGPAGPSCGLHSWLEGEQE
Nucleotide Sequence ATGAGACAGTGCTGGGCAATGGGGGGGCCCGCAGGGCCTTCTTGTGGGCTGCATAGTTGGCTTGAGGGGGAGCAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab