CircRNA Information

General Information
circRNA Basic Information
CircID chr5:168488602|168494650
Strand +
CircType exon
Host Gene ENSG00000113643.8;
Algorism find_circ;CIRI2;DCC;
Sequence GAAGAAGAGATTAAATCTCTGACTGCTGAAATTGACCGGTTGAAAAACTGTGGCTGTTTAGGAGCTTCTCCAAATTTGGAGCAGTTACAAGAAGAAAATTTAAAATTAAAGTATCGACTGAATATTCTTCGAAAGGTGAAGTCTTCAGGCAGAAAGGAACAAACCAACTAAAAATATGATTAACATTATTAGCCGCCTACAAGAGGTCTTTGGTCATGCAATTAAGGCTGCATATCCAGATTTGGAAAATCCTCCTCTGCTAGTGACACCAAGTCAGCAGGCCAAGTTTGGGGACTATCAGTGTAATAGTGCTATGGGTATTTCTCAGGTATTTCCCTCCTGCTGTGTCCAGGATTGCTGTGTGGTGGTGATGAGTGCTGGGAGATGCTCAAAACCAAGGAACAGAAAGTTAATCCAAGAGAAATTGCTGAAAACATTACCAAACACCTCCCAGACAATGAATGTATTGAAAAAGTTGAAATTGCTGGTCCTGGTTTTATTAATGTCCACTTAAGAAAGGATTTTGTATCAGAACAATTGACCAGTCTTCTAGTGAATGGAGTTCAACTACCTGCTCTGGGAGAGAATAAAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:168488602|168494650 hsa-miR-214-5p 0 0 1
chr5:168488602|168494650 hsa-miR-214-3p 0 0 1
chr5:168488602|168494650 hsa-miR-185-5p 0 0 1
chr5:168488602|168494650 hsa-miR-185-3p 0 0 1
chr5:168488602|168494650 hsa-miR-326 0 0 1
chr5:168488602|168494650 hsa-miR-133b 0 0 1
chr5:168488602|168494650 hsa-miR-345-5p 0 0 1
chr5:168488602|168494650 hsa-miR-345-3p 0 0 1
chr5:168488602|168494650 hsa-miR-448 0 0 1
chr5:168488602|168494650 hsa-miR-495-5p 0 0 1
chr5:168488602|168494650 hsa-miR-495-3p 0 0 1
chr5:168488602|168494650 hsa-miR-520f-5p 0 0 1
chr5:168488602|168494650 hsa-miR-520f-3p 0 0 1
chr5:168488602|168494650 hsa-miR-539-5p 0 0 1
chr5:168488602|168494650 hsa-miR-539-3p 0 0 1
chr5:168488602|168494650 hsa-miR-559 0 0 1
chr5:168488602|168494650 hsa-miR-570-5p 0 0 1
chr5:168488602|168494650 hsa-miR-570-3p 0 0 1
chr5:168488602|168494650 hsa-miR-633 0 0 1
chr5:168488602|168494650 hsa-miR-651-5p 0 0 1
chr5:168488602|168494650 hsa-miR-651-3p 0 0 1
chr5:168488602|168494650 hsa-miR-1323 0 1 1
chr5:168488602|168494650 hsa-miR-708-5p 0 0 1
chr5:168488602|168494650 hsa-miR-708-3p 0 0 1
chr5:168488602|168494650 hsa-miR-543 0 0 1
chr5:168488602|168494650 hsa-miR-216b-5p 0 0 1
chr5:168488602|168494650 hsa-miR-216b-3p 0 0 1
chr5:168488602|168494650 hsa-miR-922 0 0 1
chr5:168488602|168494650 hsa-miR-924 0 0 1
chr5:168488602|168494650 hsa-miR-935 0 0 1
chr5:168488602|168494650 hsa-miR-548e-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548e-3p 0 0 1
chr5:168488602|168494650 hsa-miR-548j-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548j-3p 0 0 1
chr5:168488602|168494650 hsa-miR-1290 0 0 1
chr5:168488602|168494650 hsa-miR-548k 0 0 1
chr5:168488602|168494650 hsa-miR-548l 0 0 1
chr5:168488602|168494650 hsa-miR-1257 0 1 1
chr5:168488602|168494650 hsa-miR-548g-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548g-3p 0 0 1
chr5:168488602|168494650 hsa-miR-548o-3p 0 0 1
chr5:168488602|168494650 hsa-miR-302f 0 0 1
chr5:168488602|168494650 hsa-miR-548o 0 0 1
chr5:168488602|168494650 hsa-miR-136-5p 0 1 1
chr5:168488602|168494650 hsa-miR-512-3p 0 0 1
chr5:168488602|168494650 hsa-miR-361-5p 0 0 1
chr5:168488602|168494650 hsa-miR-28-5p 0 0 1
chr5:168488602|168494650 hsa-miR-628-5p 0 0 1
chr5:168488602|168494650 hsa-miR-330-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548b-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548d-5p 0 0 1
chr5:168488602|168494650 hsa-miR-515-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548a-3p 0 0 1
chr5:168488602|168494650 hsa-miR-548c-3p 0 0 1
chr5:168488602|168494650 hsa-miR-548c-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548a-5p 0 0 1
chr5:168488602|168494650 hsa-miR-548i 0 0 1
chr5:168488602|168494650 hsa-miR-9 0 0 1
chr5:168488602|168494650 hsa-miR-138 0 0 1
chr5:168488602|168494650 hsa-miR-323-3p 0 0 1
chr5:168488602|168494650 hsa-miR-548f 0 0 1
chr5:168488602|168494650 hsa-miR-768-5p 0 0 1
chr5:168488602|168494650 hsa-miR-203 0 0 1
chr5:168488602|168494650 hsa-miR-133a 0 0 1
chr5:168488602|168494650 hsa-miR-548h 0 0 1
chr5:168488602|168494650 hsa-miR-609 1 0 0
chr5:168488602|168494650 hsa-miR-637 1 0 0
chr5:168488602|168494650 hsa-miR-1305 1 0 0
chr5:168488602|168494650 hsa-miR-3139 0 1 0
chr5:168488602|168494650 hsa-miR-3143 0 1 0
chr5:168488602|168494650 hsa-miR-4330 0 1 0
chr5:168488602|168494650 hsa-miR-4429 1 0 0
chr5:168488602|168494650 hsa-miR-4476 0 1 0
chr5:168488602|168494650 hsa-miR-4494 1 0 0
chr5:168488602|168494650 hsa-miR-4644 0 1 0
chr5:168488602|168494650 hsa-miR-4748 0 1 0
chr5:168488602|168494650 hsa-miR-5093 1 0 0
chr5:168488602|168494650 hsa-miR-5193 0 1 0
chr5:168488602|168494650 hsa-miR-4666b 0 1 0
chr5:168488602|168494650 hsa-miR-6081 0 1 0
chr5:168488602|168494650 hsa-miR-7974 1 0 0
chr5:168488602|168494650 hsa-miR-12120 0 1 0
chr5:168488602|168494650 hsa-miR-134-5p 1 0 0
chr5:168488602|168494650 hsa-miR-1972 0 1 0
chr5:168488602|168494650 hsa-miR-4687-3p 1 0 0
chr5:168488602|168494650 hsa-miR-3692-5p 1 0 0
chr5:168488602|168494650 hsa-miR-3192-5p 0 1 0
chr5:168488602|168494650 hsa-miR-4474-3p 0 1 0
chr5:168488602|168494650 hsa-miR-6842-3p 1 0 0
chr5:168488602|168494650 hsa-miR-6829-5p 1 0 0
chr5:168488602|168494650 hsa-miR-6514-5p 0 1 0
chr5:168488602|168494650 hsa-miR-3691-3p 0 1 0
chr5:168488602|168494650 hsa-miR-4690-5p 0 1 0
chr5:168488602|168494650 hsa-miR-4743-5p 1 0 0
chr5:168488602|168494650 hsa-miR-4733-3p 1 0 0
chr5:168488602|168494650 hsa-miR-6830-5p 0 1 0
chr5:168488602|168494650 hsa-miR-1306-5p 0 1 0
chr5:168488602|168494650 hsa-miR-199a-5p 1 0 0
chr5:168488602|168494650 hsa-miR-7152-3p 0 1 0
chr5:168488602|168494650 hsa-miR-4652-5p 0 1 0
chr5:168488602|168494650 hsa-miR-503-3p 0 1 0
chr5:168488602|168494650 hsa-miR-5197-3p 0 1 0
chr5:168488602|168494650 hsa-miR-541-5p 0 1 0
chr5:168488602|168494650 hsa-miR-449c-3p 0 1 0
chr5:168488602|168494650 hsa-miR-4668-3p 0 1 0
chr5:168488602|168494650 hsa-miR-589-3p 0 1 0
chr5:168488602|168494650 hsa-miR-4795-3p 0 1 0
chr5:168488602|168494650 hsa-miR-5007-5p 0 1 0
chr5:168488602|168494650 hsa-miR-6788-5p 0 1 0
chr5:168488602|168494650 hsa-miR-6808-5p 0 1 0
chr5:168488602|168494650 hsa-miR-6846-5p 1 0 0
chr5:168488602|168494650 hsa-miR-6848-5p 1 0 0
chr5:168488602|168494650 hsa-miR-365a-5p 1 0 0
chr5:168488602|168494650 hsa-miR-6511a-5p 0 1 0
chr5:168488602|168494650 hsa-miR-6511b-5p 1 0 0
chr5:168488602|168494650 hsa-miR-30c-1-3p 0 1 0
chr5:168488602|168494650 hsa-miR-5591-5p 1 0 0
chr5:168488602|168494650 hsa-miR-320a-3p 1 0 0
chr5:168488602|168494650 hsa-miR-320b 1 0 0
chr5:168488602|168494650 hsa-miR-3619-5p 0 1 0
chr5:168488602|168494650 hsa-miR-582-3p 1 0 0
chr5:168488602|168494650 hsa-miR-498-3p 0 1 0
chr5:168488602|168494650 hsa-miR-519e-5p 0 1 0
chr5:168488602|168494650 hsa-miR-323a-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:168488602|168494650
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MFLGFEHLRNTHSTITLIVPKLGLLTWCH
Nucleotide Sequence CTGTTCCTTGGTTTTGAGCATCTGAGAAATACCCATAGCACTATTACACTGATAGTCCCCAAACTTGGCCTGCTGACTTGGTGTCACTAG
CircID chr5:168488602|168494650
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MVNCSDTKSFLKWTLIKPGPAISTFSIHSLSGRCLVMFSAISLGLTFCSLVLSI
Nucleotide Sequence CTGGTCAATTGTTCTGATACAAAATCCTTTCTTAAGTGGACATTAATAAAACCAGGACCAGCAATTTCAACTTTTTCAATACATTCATTGTCTGGGAGGTGTTTGGTAATGTTTTCAGCAATTTCTCTTGGATTAACTTTCTGTTCCTTGGTTTTGAGCATCTGA
CircID chr5:168488602|168494650
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MVCSFLPEDSFEEYSVDTLILNFLLVTAPNLEKLLNSHSFSTGQFQQSEI
Nucleotide Sequence TTGGTTTGTTCCTTTCTGCCTGAAGACTCTTTCGAAGAATATTCAGTCGATACTTTAATTTTAAATTTTCTTCTTGTAACTGCTCCAAATTTGGAGAAGCTCCTAAACAGCCACAGTTTTTCAACCGGTCAATTTCAGCAGTCAGAGATTTAA
CircID chr5:168488602|168494650
ORF Type ORF4
Protein Length 172
Nucleotide Length 516
Protein Sequence MTAEIDRLKNCGCLGASPNLEQLQEENLKLKYRLNILRKSLQAERNKPTKNMINIISRLQEVFGHAIKAAYPDLENPPLLVTPSQQAKFGDYQCNSAMGISQMLKTKEQKVNPREIAENITKHLPDNECIEKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPALGENKK
Nucleotide Sequence CTGACTGCTGAAATTGACCGGTTGAAAAACTGTGGCTGTTTAGGAGCTTCTCCAAATTTGGAGCAGTTACAAGAAGAAAATTTAAAATTAAAGTATCGACTGAATATTCTTCGAAAGAGTCTTCAGGCAGAAAGGAACAAACCAACTAAAAATATGATTAACATTATTAGCCGCCTACAAGAGGTCTTTGGTCATGCAATTAAGGCTGCATATCCAGATTTGGAAAATCCTCCTCTGCTAGTGACACCAAGTCAGCAGGCCAAGTTTGGGGACTATCAGTGTAATAGTGCTATGGGTATTTCTCAGATGCTCAAAACCAAGGAACAGAAAGTTAATCCAAGAGAAATTGCTGAAAACATTACCAAACACCTCCCAGACAATGAATGTATTGAAAAAGTTGAAATTGCTGGTCCTGGTTTTATTAATGTCCACTTAAGAAAGGATTTTGTATCAGAACAATTGACCAGTCTTCTAGTGAATGGAGTTCAACTACCTGCTCTGGGAGAGAATAAAAAG
CircID chr5:168488602|168494650
ORF Type ORF5
Protein Length 56
Nucleotide Length 171
Protein Sequence MGTISVIVLWVFLRCSKPRNRKLIQEKLLKTLPNTSQTMNVLKKLKLLVLVLLMST
Nucleotide Sequence TTGGGGACTATCAGTGTAATAGTGCTATGGGTATTTCTCAGATGCTCAAAACCAAGGAACAGAAAGTTAATCCAAGAGAAATTGCTGAAAACATTACCAAACACCTCCCAGACAATGAATGTATTGAAAAAGTTGAAATTGCTGGTCCTGGTTTTATTAATGTCCACTTAA
CircID chr5:168488602|168494650
ORF Type ORF6
Protein Length 39
Nucleotide Length 120
Protein Sequence MWLFRSFSKFGAVTRRKFKIKVSTEYSSKESSGRKEQTN
Nucleotide Sequence CTGTGGCTGTTTAGGAGCTTCTCCAAATTTGGAGCAGTTACAAGAAGAAAATTTAAAATTAAAGTATCGACTGAATATTCTTCGAAAGAGTCTTCAGGCAGAAAGGAACAAACCAACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:168488602|168494650 U2AF2 10 31 9
chr5:168488602|168494650 MOV10 0 4 1
chr5:168488602|168494650 ELAVL1 4 10 3
chr5:168488602|168494650 SF3B4 0 2 0
chr5:168488602|168494650 FAM120A 1 1 3
chr5:168488602|168494650 KHDRBS1 0 1 0
chr5:168488602|168494650 CELF2 0 0 1
chr5:168488602|168494650 CNBP 0 0 1
chr5:168488602|168494650 DDX42 0 1 0
chr5:168488602|168494650 UPF1 0 3 0
chr5:168488602|168494650 TNRC6A 0 0 1
chr5:168488602|168494650 FMR1 1 3 2
chr5:168488602|168494650 CPSF6 0 1 0
chr5:168488602|168494650 FUS 0 1 0
chr5:168488602|168494650 GNL3 0 1 0
chr5:168488602|168494650 DGCR8 0 3 1
chr5:168488602|168494650 SRSF1 1 7 8
chr5:168488602|168494650 NOP58 0 6 8
chr5:168488602|168494650 U2AF1 1 5 0
chr5:168488602|168494650 NOP56 0 3 1
chr5:168488602|168494650 SRSF9 0 1 2
chr5:168488602|168494650 HNRNPU 0 1 0
chr5:168488602|168494650 DDX54 0 5 9
chr5:168488602|168494650 SBDS 0 1 0
chr5:168488602|168494650 RBM10 4 13 0
chr5:168488602|168494650 HNRNPM 0 1 2
chr5:168488602|168494650 SF3A3 2 3 0
chr5:168488602|168494650 PTBP1 0 1 1
chr5:168488602|168494650 HNRNPC 5 3 0
chr5:168488602|168494650 TRA2A 2 0 0
chr5:168488602|168494650 HNRNPA2B1 0 1 0
chr5:168488602|168494650 DHX9 0 1 1
chr5:168488602|168494650 HNRNPA1 2 1 0
chr5:168488602|168494650 DDX3X 2 2 1
chr5:168488602|168494650 TIAL1 0 1 0
chr5:168488602|168494650 LARP4B 0 0 1
chr5:168488602|168494650 SMNDC1 0 2 1
chr5:168488602|168494650 MSI2 0 1 1
chr5:168488602|168494650 ACIN1 0 4 9
chr5:168488602|168494650 LIN28B 0 2 4
chr5:168488602|168494650 LIN28A 0 1 1
chr5:168488602|168494650 RANGAP1 0 1 1
chr5:168488602|168494650 FXR1 0 1 0
chr5:168488602|168494650 FXR2 1 4 0
chr5:168488602|168494650 SND1 0 1 0
chr5:168488602|168494650 IGF2BP1 0 1 5
chr5:168488602|168494650 IGF2BP3 0 0 2
chr5:168488602|168494650 IGF2BP2 0 12 10
chr5:168488602|168494650 RBFOX2 0 3 0
chr5:168488602|168494650 TAF15 0 1 0
chr5:168488602|168494650 GTF2F1 0 1 0
chr5:168488602|168494650 KHSRP 0 2 0
chr5:168488602|168494650 PRPF8 0 7 1
chr5:168488602|168494650 SLTM 1 1 1
chr5:168488602|168494650 RTCB 0 1 0
chr5:168488602|168494650 RBM47 0 1 1
chr5:168488602|168494650 CSTF2T 0 0 3
chr5:168488602|168494650 TIA1 0 5 0
chr5:168488602|168494650 RBM27 0 1 0
chr5:168488602|168494650 RBM22 0 4 0
chr5:168488602|168494650 XRN2 0 3 0
chr5:168488602|168494650 HNRNPK 1 2 0
chr5:168488602|168494650 FBL 1 5 5
chr5:168488602|168494650 AGO1 0 0 1
chr5:168488602|168494650 EIF4A3 4 4 8
chr5:168488602|168494650 AGO2 1 1 15
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab