CircRNA Information

General Information
circRNA Basic Information
CircID chr5:173317535|173317763
Strand -
CircType exon
Host Gene ENSG00000113739.9;
Algorism CIRI2;
Sequence CTCCCCCACAACAGAGCGGCCGACACCCACTGACTCCACAGATGGAAAGAAGACAAAGGTACGAGGATAACGCGGGCGCGCTCCCTTGAGTACGTGTAAGTGCAGAATTCACCAGGCACCCCTGAGACCCCACGGCCCCAGGGGTCTCCATCTCACCTGTCCGTTCCGCGAACACACACCTCGATGAAGTCCACAGTCCCCACAGAATCCTGCGTGTGACATCCCCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:173317535|173317763 hsa-miR-143-5p 0 0 1
chr5:173317535|173317763 hsa-miR-143-3p 0 0 1
chr5:173317535|173317763 hsa-miR-126-5p 0 0 1
chr5:173317535|173317763 hsa-miR-126-3p 0 0 1
chr5:173317535|173317763 hsa-miR-511-5p 0 0 1
chr5:173317535|173317763 hsa-miR-511-3p 0 0 1
chr5:173317535|173317763 hsa-miR-552-5p 0 0 1
chr5:173317535|173317763 hsa-miR-552-3p 0 0 1
chr5:173317535|173317763 hsa-miR-587 0 0 1
chr5:173317535|173317763 hsa-miR-609 0 0 1
chr5:173317535|173317763 hsa-miR-625-5p 0 0 1
chr5:173317535|173317763 hsa-miR-625-3p 0 0 1
chr5:173317535|173317763 hsa-miR-661 1 0 1
chr5:173317535|173317763 hsa-miR-888-5p 0 0 1
chr5:173317535|173317763 hsa-miR-888-3p 0 0 1
chr5:173317535|173317763 hsa-miR-1266-5p 0 0 1
chr5:173317535|173317763 hsa-miR-1266-3p 0 0 1
chr5:173317535|173317763 hsa-miR-1267 0 0 1
chr5:173317535|173317763 hsa-miR-1275 0 0 1
chr5:173317535|173317763 hsa-miR-125a-3p 0 1 1
chr5:173317535|173317763 hsa-miR-491-5p 1 0 1
chr5:173317535|173317763 hsa-miR-615-5p 0 0 1
chr5:173317535|173317763 hsa-miR-1289 0 0 1
chr5:173317535|173317763 hsa-miR-331-3p 0 1 1
chr5:173317535|173317763 hsa-miR-342-5p 0 0 1
chr5:173317535|173317763 hsa-miR-550 0 0 1
chr5:173317535|173317763 hsa-miR-544 0 0 1
chr5:173317535|173317763 hsa-miR-1254 0 0 1
chr5:173317535|173317763 hsa-miR-608 1 0 0
chr5:173317535|173317763 hsa-miR-636 1 0 0
chr5:173317535|173317763 hsa-miR-637 1 0 0
chr5:173317535|173317763 hsa-miR-920 1 0 0
chr5:173317535|173317763 hsa-miR-1471 1 0 0
chr5:173317535|173317763 hsa-miR-3138 1 0 0
chr5:173317535|173317763 hsa-miR-4322 1 0 0
chr5:173317535|173317763 hsa-miR-4447 1 0 0
chr5:173317535|173317763 hsa-miR-4450 1 0 0
chr5:173317535|173317763 hsa-miR-378h 1 0 0
chr5:173317535|173317763 hsa-miR-4491 1 0 0
chr5:173317535|173317763 hsa-miR-4514 1 0 0
chr5:173317535|173317763 hsa-miR-4518 0 1 0
chr5:173317535|173317763 hsa-miR-4525 1 1 0
chr5:173317535|173317763 hsa-miR-4651 1 0 0
chr5:173317535|173317763 hsa-miR-4656 1 0 0
chr5:173317535|173317763 hsa-miR-4734 1 0 0
chr5:173317535|173317763 hsa-miR-4741 1 0 0
chr5:173317535|173317763 hsa-miR-4752 1 1 0
chr5:173317535|173317763 hsa-miR-5572 1 0 0
chr5:173317535|173317763 hsa-miR-5698 1 0 0
chr5:173317535|173317763 hsa-miR-6085 1 0 0
chr5:173317535|173317763 hsa-miR-6132 1 0 0
chr5:173317535|173317763 hsa-miR-8052 1 1 0
chr5:173317535|173317763 hsa-miR-8089 1 0 0
chr5:173317535|173317763 hsa-miR-12119 1 1 0
chr5:173317535|173317763 hsa-miR-7155-5p 0 1 0
chr5:173317535|173317763 hsa-miR-6747-5p 1 0 0
chr5:173317535|173317763 hsa-miR-3150a-3p 1 0 0
chr5:173317535|173317763 hsa-miR-6857-5p 1 0 0
chr5:173317535|173317763 hsa-miR-4687-3p 1 0 0
chr5:173317535|173317763 hsa-miR-486-5p 1 0 0
chr5:173317535|173317763 hsa-miR-8071 1 0 0
chr5:173317535|173317763 hsa-miR-1227-5p 0 1 0
chr5:173317535|173317763 hsa-miR-7114-5p 1 1 0
chr5:173317535|173317763 hsa-miR-769-5p 0 1 0
chr5:173317535|173317763 hsa-miR-6867-5p 0 1 0
chr5:173317535|173317763 hsa-miR-4722-5p 1 0 0
chr5:173317535|173317763 hsa-miR-3151-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6772-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6796-5p 1 1 0
chr5:173317535|173317763 hsa-miR-4697-3p 0 1 0
chr5:173317535|173317763 hsa-miR-6805-5p 1 0 0
chr5:173317535|173317763 hsa-miR-1224-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6782-5p 1 1 0
chr5:173317535|173317763 hsa-miR-6821-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6810-5p 1 1 0
chr5:173317535|173317763 hsa-miR-5008-5p 1 1 0
chr5:173317535|173317763 hsa-miR-6850-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6740-3p 0 1 0
chr5:173317535|173317763 hsa-miR-6786-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6852-5p 0 1 0
chr5:173317535|173317763 hsa-miR-4783-5p 1 0 0
chr5:173317535|173317763 hsa-miR-149-3p 1 0 0
chr5:173317535|173317763 hsa-miR-6789-5p 1 0 0
chr5:173317535|173317763 hsa-miR-194-3p 1 1 0
chr5:173317535|173317763 hsa-miR-4740-5p 1 0 0
chr5:173317535|173317763 hsa-miR-5010-5p 0 1 0
chr5:173317535|173317763 hsa-miR-4800-5p 1 0 0
chr5:173317535|173317763 hsa-miR-3189-3p 0 1 0
chr5:173317535|173317763 hsa-miR-3191-3p 1 0 0
chr5:173317535|173317763 hsa-miR-500a-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6782-3p 0 1 0
chr5:173317535|173317763 hsa-miR-6770-3p 1 0 0
chr5:173317535|173317763 hsa-miR-6789-3p 1 0 0
chr5:173317535|173317763 hsa-miR-6769b-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6870-5p 1 0 0
chr5:173317535|173317763 hsa-miR-1343-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6726-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6752-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6803-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6813-5p 1 0 0
chr5:173317535|173317763 hsa-miR-7110-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6722-3p 1 0 0
chr5:173317535|173317763 hsa-miR-328-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6795-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6846-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6848-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6887-5p 1 0 0
chr5:173317535|173317763 hsa-miR-6885-5p 1 0 0
chr5:173317535|173317763 hsa-miR-4758-5p 1 0 0
chr5:173317535|173317763 hsa-miR-3198 0 1 0
chr5:173317535|173317763 hsa-miR-6855-5p 1 1 0
chr5:173317535|173317763 hsa-miR-6791-5p 1 1 0
chr5:173317535|173317763 hsa-miR-550a-5p 1 0 0
chr5:173317535|173317763 hsa-miR-769-3p 1 1 0
chr5:173317535|173317763 hsa-miR-10400-3p 1 0 0
chr5:173317535|173317763 hsa-miR-4756-5p 1 0 0
chr5:173317535|173317763 hsa-miR-330-5p 0 1 0
chr5:173317535|173317763 hsa-miR-494-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:173317535|173317763
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MSTCKCRIHQAPLRPHGPRGLHLTCPFREHTPR
Nucleotide Sequence TTGAGTACGTGTAAGTGCAGAATTCACCAGGCACCCCTGAGACCCCACGGCCCCAGGGGTCTCCATCTCACCTGTCCGTTCCGCGAACACACACCTCGATGA
CircID chr5:173317535|173317763
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MWGLWTSSRCVFAERTGEMETPGAVGSQGCLVNSALTRTQGSAPALSSYLCLLSICGVSGCRPLCCGG
Nucleotide Sequence CTGTGGGGACTGTGGACTTCATCGAGGTGTGTGTTCGCGGAACGGACAGGTGAGATGGAGACCCCTGGGGCCGTGGGGTCTCAGGGGTGCCTGGTGAATTCTGCACTTACACGTACTCAAGGGAGCGCGCCCGCGTTATCCTCGTACCTTTGTCTTCTTTCCATCTGTGGAGTCAGTGGGTGTCGGCCGCTCTGTTGTGGGGGA
CircID chr5:173317535|173317763
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MSHAGFCGDCGLHRGVCSRNGQVRWRPLGPWGLRGAW
Nucleotide Sequence ATGTCACACGCAGGATTCTGTGGGGACTGTGGACTTCATCGAGGTGTGTGTTCGCGGAACGGACAGGTGAGATGGAGACCCCTGGGGCCGTGGGGTCTCAGGGGTGCCTGGTGA
CircID chr5:173317535|173317763
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MHLHVLKGARPRYPRTFVFFPSVESVGVGRSVVGE
Nucleotide Sequence CTGCACTTACACGTACTCAAGGGAGCGCGCCCGCGTTATCCTCGTACCTTTGTCTTCTTTCCATCTGTGGAGTCAGTGGGTGTCGGCCGCTCTGTTGTGGGGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab