CircRNA Information

General Information
circRNA Basic Information
CircID chr5:173317710|173317892
Strand -
CircType exon
Host Gene ENSG00000113739.9;
Algorism CIRI2;
Sequence ACACCTCGATGAAGTCCACAGTCCCCACAGAATCCTGCGTGTGACATCCCCCCTCTCTAATGGTAAATGTTTTGGAATGTCCATAGATAAGAAAATGGACGGCGTGGAGGAAAGATTTCGTGGCCAGGCCTTTCATTTCACCTCCGGATATCAGAATACTCAGACTGTTCGTCTTCCCACTCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:173317710|173317892 hsa-miR-212-5p 0 0 1
chr5:173317710|173317892 hsa-miR-212-3p 0 0 1
chr5:173317710|173317892 hsa-miR-132-5p 0 0 1
chr5:173317710|173317892 hsa-miR-132-3p 0 0 1
chr5:173317710|173317892 hsa-miR-488-5p 0 0 1
chr5:173317710|173317892 hsa-miR-488-3p 0 0 1
chr5:173317710|173317892 hsa-miR-496 0 0 1
chr5:173317710|173317892 hsa-miR-588 0 0 1
chr5:173317710|173317892 hsa-miR-622 0 0 1
chr5:173317710|173317892 hsa-miR-630 0 1 1
chr5:173317710|173317892 hsa-miR-1238-5p 0 0 1
chr5:173317710|173317892 hsa-miR-1238-3p 0 0 1
chr5:173317710|173317892 hsa-miR-1203 0 0 1
chr5:173317710|173317892 hsa-miR-1303 0 1 1
chr5:173317710|173317892 hsa-miR-491-5p 1 0 1
chr5:173317710|173317892 hsa-miR-7 0 0 1
chr5:173317710|173317892 hsa-miR-203 0 0 1
chr5:173317710|173317892 hsa-miR-608 1 0 0
chr5:173317710|173317892 hsa-miR-637 1 0 0
chr5:173317710|173317892 hsa-miR-920 1 0 0
chr5:173317710|173317892 hsa-miR-921 1 0 0
chr5:173317710|173317892 hsa-miR-2110 1 0 0
chr5:173317710|173317892 hsa-miR-2278 1 0 0
chr5:173317710|173317892 hsa-miR-4447 1 0 0
chr5:173317710|173317892 hsa-miR-4450 1 0 0
chr5:173317710|173317892 hsa-miR-4514 1 0 0
chr5:173317710|173317892 hsa-miR-4525 1 1 0
chr5:173317710|173317892 hsa-miR-4654 1 0 0
chr5:173317710|173317892 hsa-miR-4656 1 0 0
chr5:173317710|173317892 hsa-miR-4658 1 0 0
chr5:173317710|173317892 hsa-miR-4682 1 0 0
chr5:173317710|173317892 hsa-miR-4739 1 0 0
chr5:173317710|173317892 hsa-miR-4752 0 1 0
chr5:173317710|173317892 hsa-miR-5093 1 1 0
chr5:173317710|173317892 hsa-miR-5698 1 0 0
chr5:173317710|173317892 hsa-miR-8052 1 1 0
chr5:173317710|173317892 hsa-miR-8089 1 0 0
chr5:173317710|173317892 hsa-miR-12119 1 1 0
chr5:173317710|173317892 hsa-miR-432-3p 1 0 0
chr5:173317710|173317892 hsa-miR-6747-5p 1 0 0
chr5:173317710|173317892 hsa-miR-3150a-3p 1 0 0
chr5:173317710|173317892 hsa-miR-6799-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6796-5p 0 1 0
chr5:173317710|173317892 hsa-miR-6732-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6805-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6810-5p 1 1 0
chr5:173317710|173317892 hsa-miR-149-3p 1 0 0
chr5:173317710|173317892 hsa-miR-6886-5p 1 1 0
chr5:173317710|173317892 hsa-miR-5010-5p 1 1 0
chr5:173317710|173317892 hsa-miR-4727-3p 1 0 0
chr5:173317710|173317892 hsa-miR-3124-3p 0 1 0
chr5:173317710|173317892 hsa-miR-6512-5p 1 1 0
chr5:173317710|173317892 hsa-miR-6778-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6870-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6726-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6752-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6756-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6803-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6813-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6851-5p 1 1 0
chr5:173317710|173317892 hsa-miR-10401-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6780a-5p 1 0 0
chr5:173317710|173317892 hsa-miR-7111-5p 1 0 0
chr5:173317710|173317892 hsa-miR-4728-5p 1 0 0
chr5:173317710|173317892 hsa-miR-5196-5p 1 0 0
chr5:173317710|173317892 hsa-miR-328-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6795-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6846-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6848-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6887-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6885-5p 1 0 0
chr5:173317710|173317892 hsa-miR-6758-5p 1 1 0
chr5:173317710|173317892 hsa-miR-6856-5p 1 0 0
chr5:173317710|173317892 hsa-miR-1914-3p 1 0 0
chr5:173317710|173317892 hsa-miR-4646-5p 1 0 0
chr5:173317710|173317892 hsa-miR-4716-3p 1 0 0
chr5:173317710|173317892 hsa-miR-6792-3p 0 1 0
chr5:173317710|173317892 hsa-miR-4701-5p 0 1 0
chr5:173317710|173317892 hsa-miR-4691-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:173317710|173317892
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MRVTSPLSNGKCFGMSIDKKMDGVEERFRGQAFHFTSGYQNTQTVRLPT
Nucleotide Sequence CTGCGTGTGACATCCCCCCTCTCTAATGGTAAATGTTTTGGAATGTCCATAGATAAGAAAATGGACGGCGTGGAGGAAAGATTTCGTGGCCAGGCCTTTCATTTCACCTCCGGATATCAGAATACTCAGACTGTTCGTCTTCCCACT
CircID chr5:173317710|173317892
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MDIPKHLPLERGDVTRRILWGLWTSSRC
Nucleotide Sequence ATGGACATTCCAAAACATTTACCATTAGAGAGGGGGGATGTCACACGCAGGATTCTGTGGGGACTGTGGACTTCATCGAGGTGT
CircID chr5:173317710|173317892
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MSILISGGEMKGLATKSFLHAVHFLIYGHSKTFTIREGGCHTQDSVGTVDFIEV
Nucleotide Sequence CTGAGTATTCTGATATCCGGAGGTGAAATGAAAGGCCTGGCCACGAAATCTTTCCTCCACGCCGTCCATTTTCTTATCTATGGACATTCCAAAACATTTACCATTAGAGAGGGGGGATGTCACACGCAGGATTCTGTGGGGACTGTGGACTTCATCGAGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab