CircRNA Information

General Information
circRNA Basic Information
CircID chr5:173317906|173318041
Strand +
CircType exon
Host Gene ENSG00000113739.9;
Algorism CIRI2;
Sequence CACGGGGAAGCAGGACATCACCTCCCAGAGCCCAGCAGTAGGGAGACTGGCCGAGGTGCCAAGGGTGAGCGAGGTAGCAAGAGCCACCCAAACGCCCATGCCCGAGGCAGAGTCGGGGGCCTTGGGGCTCAGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:173317906|173318041 hsa-miR-96-5p 0 0 1
chr5:173317906|173318041 hsa-miR-96-3p 0 0 1
chr5:173317906|173318041 hsa-miR-370-5p 0 0 1
chr5:173317906|173318041 hsa-miR-370-3p 0 0 1
chr5:173317906|173318041 hsa-miR-326 0 0 1
chr5:173317906|173318041 hsa-miR-585-5p 0 0 1
chr5:173317906|173318041 hsa-miR-585-3p 0 0 1
chr5:173317906|173318041 hsa-miR-1271-5p 0 0 1
chr5:173317906|173318041 hsa-miR-1271-3p 0 0 1
chr5:173317906|173318041 hsa-miR-760 0 1 1
chr5:173317906|173318041 hsa-miR-1293 0 0 1
chr5:173317906|173318041 hsa-miR-1262 0 0 1
chr5:173317906|173318041 hsa-miR-1225-3p 1 1 1
chr5:173317906|173318041 hsa-miR-125a-5p 1 1 1
chr5:173317906|173318041 hsa-miR-330-5p 0 1 1
chr5:173317906|173318041 hsa-miR-516a-3p 0 0 1
chr5:173317906|173318041 hsa-miR-1233 0 0 1
chr5:173317906|173318041 hsa-miR-125b 0 0 1
chr5:173317906|173318041 hsa-miR-1268 0 0 1
chr5:173317906|173318041 hsa-miR-1200 1 0 0
chr5:173317906|173318041 hsa-miR-3147 1 0 0
chr5:173317906|173318041 hsa-miR-4319 0 1 0
chr5:173317906|173318041 hsa-miR-4323 0 1 0
chr5:173317906|173318041 hsa-miR-4292 1 0 0
chr5:173317906|173318041 hsa-miR-3689c 0 1 0
chr5:173317906|173318041 hsa-miR-4522 0 1 0
chr5:173317906|173318041 hsa-miR-4674 0 1 0
chr5:173317906|173318041 hsa-miR-3692-5p 0 1 0
chr5:173317906|173318041 hsa-miR-3192-5p 0 1 0
chr5:173317906|173318041 hsa-miR-3622b-5p 0 1 0
chr5:173317906|173318041 hsa-miR-3189-5p 1 0 0
chr5:173317906|173318041 hsa-miR-6793-5p 1 0 0
chr5:173317906|173318041 hsa-miR-30b-3p 0 1 0
chr5:173317906|173318041 hsa-miR-939-3p 1 0 0
chr5:173317906|173318041 hsa-miR-5001-3p 0 1 0
chr5:173317906|173318041 hsa-miR-6813-3p 1 1 0
chr5:173317906|173318041 hsa-miR-6814-5p 0 1 0
chr5:173317906|173318041 hsa-miR-1914-5p 1 0 0
chr5:173317906|173318041 hsa-miR-6510-3p 0 1 0
chr5:173317906|173318041 hsa-miR-1273h-5p 0 1 0
chr5:173317906|173318041 hsa-miR-3689b-3p 0 1 0
chr5:173317906|173318041 hsa-miR-3689a-3p 0 1 0
chr5:173317906|173318041 hsa-miR-1199-5p 1 1 0
chr5:173317906|173318041 hsa-miR-5008-3p 1 0 0
chr5:173317906|173318041 hsa-miR-6724-5p 1 0 0
chr5:173317906|173318041 hsa-miR-6791-5p 1 0 0
chr5:173317906|173318041 hsa-miR-6784-3p 0 1 0
chr5:173317906|173318041 hsa-miR-6862-3p 0 1 0
chr5:173317906|173318041 hsa-miR-10400-3p 0 1 0
chr5:173317906|173318041 hsa-miR-6751-3p 0 1 0
chr5:173317906|173318041 hsa-miR-362-5p 0 1 0
chr5:173317906|173318041 hsa-miR-125b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr5:173317906|173318041
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MAEVPRVSEVARATQTPMPEAESGALGLRD
Nucleotide Sequence CTGGCCGAGGTGCCAAGGGTGAGCGAGGTAGCAAGAGCCACCCAAACGCCCATGCCCGAGGCAGAGTCGGGGGCCTTGGGGCTCAGGGAC

CircID chr5:173317906|173318041
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MGGSCYLAHPWHLGQSPYCWALGGDVLLPR
Nucleotide Sequence TTGGGTGGCTCTTGCTACCTCGCTCACCCTTGGCACCTCGGCCAGTCTCCCTACTGCTGGGCTCTGGGAGGTGATGTCCTGCTTCCCCGT

CircID chr5:173317906|173318041
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MSPKAPDSASGMGVWVALATSLTLGTSASLPTAGLWEVMSCFPV
Nucleotide Sequence CTGAGCCCCAAGGCCCCCGACTCTGCCTCGGGCATGGGCGTTTGGGTGGCTCTTGCTACCTCGCTCACCCTTGGCACCTCGGCCAGTCTCCCTACTGCTGGGCTCTGGGAGGTGATGTCCTGCTTCCCCGTG

CircID chr5:173317906|173318041
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MPRAWAFGWLLLPRSPLAPRPVSLLLGSGR
Nucleotide Sequence CTGCCTCGGGCATGGGCGTTTGGGTGGCTCTTGCTACCTCGCTCACCCTTGGCACCTCGGCCAGTCTCCCTACTGCTGGGCTCTGGGAGGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites