CircRNA Information

General Information
circRNA Basic Information
CircID chr5:177483895|177484164
Strand +
CircType exon
Host Gene ENSG00000196923.12;
Algorism CIRI2;
Sequence CTGGCACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGGTACCCACTGGCCAGTGAGGGTGAGGAGGGATGGTGCATGGGGCAGGCATGAATCCAGGTCCTCTTTCTCTCTGCCCCCATTCTCAGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGGGACCGCTTCCTGGAGGCCCTGGGCTTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:177483895|177484164 hsa-miR-148a-5p 0 0 1
chr5:177483895|177484164 hsa-miR-148a-3p 0 0 1
chr5:177483895|177484164 hsa-miR-224-5p 0 0 1
chr5:177483895|177484164 hsa-miR-224-3p 0 0 1
chr5:177483895|177484164 hsa-miR-152-5p 0 0 1
chr5:177483895|177484164 hsa-miR-152-3p 0 0 1
chr5:177483895|177484164 hsa-miR-148b-5p 0 0 1
chr5:177483895|177484164 hsa-miR-148b-3p 0 0 1
chr5:177483895|177484164 hsa-miR-431-5p 0 0 1
chr5:177483895|177484164 hsa-miR-431-3p 0 0 1
chr5:177483895|177484164 hsa-miR-492 0 0 1
chr5:177483895|177484164 hsa-miR-193b-5p 0 0 1
chr5:177483895|177484164 hsa-miR-193b-3p 0 0 1
chr5:177483895|177484164 hsa-miR-517-5p 0 0 1
chr5:177483895|177484164 hsa-miR-517a-3p 0 0 1
chr5:177483895|177484164 hsa-miR-517c-3p 0 0 1
chr5:177483895|177484164 hsa-miR-573 0 0 1
chr5:177483895|177484164 hsa-miR-580-5p 0 0 1
chr5:177483895|177484164 hsa-miR-580-3p 0 0 1
chr5:177483895|177484164 hsa-miR-583 0 0 1
chr5:177483895|177484164 hsa-miR-585-5p 0 0 1
chr5:177483895|177484164 hsa-miR-585-3p 0 0 1
chr5:177483895|177484164 hsa-miR-619-5p 0 0 1
chr5:177483895|177484164 hsa-miR-619-3p 0 0 1
chr5:177483895|177484164 hsa-miR-631 0 0 1
chr5:177483895|177484164 hsa-miR-665 1 0 1
chr5:177483895|177484164 hsa-miR-942-5p 0 0 1
chr5:177483895|177484164 hsa-miR-942-3p 0 0 1
chr5:177483895|177484164 hsa-miR-1291 0 0 1
chr5:177483895|177484164 hsa-miR-1256 0 0 1
chr5:177483895|177484164 hsa-miR-486-3p 0 0 1
chr5:177483895|177484164 hsa-miR-767-5p 0 0 1
chr5:177483895|177484164 hsa-miR-146b-3p 0 0 1
chr5:177483895|177484164 hsa-miR-1225-5p 0 1 1
chr5:177483895|177484164 hsa-miR-324-3p 0 0 1
chr5:177483895|177484164 hsa-miR-502-3p 0 0 1
chr5:177483895|177484164 hsa-miR-501-3p 0 0 1
chr5:177483895|177484164 hsa-miR-193a-3p 0 0 1
chr5:177483895|177484164 hsa-miR-1274b 0 0 1
chr5:177483895|177484164 hsa-miR-1268 0 0 1
chr5:177483895|177484164 hsa-miR-346 1 0 0
chr5:177483895|177484164 hsa-miR-643 1 0 0
chr5:177483895|177484164 hsa-miR-1265 1 0 0
chr5:177483895|177484164 hsa-miR-1913 0 1 0
chr5:177483895|177484164 hsa-miR-2278 0 1 0
chr5:177483895|177484164 hsa-miR-4254 1 0 0
chr5:177483895|177484164 hsa-miR-3911 1 0 0
chr5:177483895|177484164 hsa-miR-4449 1 0 0
chr5:177483895|177484164 hsa-miR-2392 0 1 0
chr5:177483895|177484164 hsa-miR-4512 0 1 0
chr5:177483895|177484164 hsa-miR-4514 0 1 0
chr5:177483895|177484164 hsa-miR-4519 0 1 0
chr5:177483895|177484164 hsa-miR-4635 0 1 0
chr5:177483895|177484164 hsa-miR-4656 1 0 0
chr5:177483895|177484164 hsa-miR-4688 1 0 0
chr5:177483895|177484164 hsa-miR-4692 1 1 0
chr5:177483895|177484164 hsa-miR-4706 1 0 0
chr5:177483895|177484164 hsa-miR-5193 1 1 0
chr5:177483895|177484164 hsa-miR-6069 1 0 0
chr5:177483895|177484164 hsa-miR-12122 0 1 0
chr5:177483895|177484164 hsa-miR-127-5p 0 1 0
chr5:177483895|177484164 hsa-miR-18a-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6746-5p 1 0 0
chr5:177483895|177484164 hsa-miR-6806-5p 1 0 0
chr5:177483895|177484164 hsa-miR-197-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6716-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6768-5p 0 1 0
chr5:177483895|177484164 hsa-miR-877-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6760-5p 0 1 0
chr5:177483895|177484164 hsa-miR-2467-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6735-3p 1 0 0
chr5:177483895|177484164 hsa-miR-615-5p 1 0 0
chr5:177483895|177484164 hsa-miR-939-3p 1 0 0
chr5:177483895|177484164 hsa-miR-4763-5p 1 1 0
chr5:177483895|177484164 hsa-miR-6894-3p 1 1 0
chr5:177483895|177484164 hsa-miR-885-3p 1 0 0
chr5:177483895|177484164 hsa-miR-4667-3p 0 1 0
chr5:177483895|177484164 hsa-miR-7112-5p 1 0 0
chr5:177483895|177484164 hsa-miR-3190-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6886-3p 1 0 0
chr5:177483895|177484164 hsa-miR-4670-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6775-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6722-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6808-5p 1 0 0
chr5:177483895|177484164 hsa-miR-328-5p 1 0 0
chr5:177483895|177484164 hsa-miR-449c-5p 0 1 0
chr5:177483895|177484164 hsa-miR-4632-5p 1 0 0
chr5:177483895|177484164 hsa-miR-4685-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6735-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6848-5p 1 0 0
chr5:177483895|177484164 hsa-miR-4436b-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6511b-5p 1 1 0
chr5:177483895|177484164 hsa-miR-10396a-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6758-5p 0 1 0
chr5:177483895|177484164 hsa-miR-1271-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6791-3p 1 0 0
chr5:177483895|177484164 hsa-miR-4722-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6784-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6792-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6862-3p 0 1 0
chr5:177483895|177484164 hsa-miR-6829-3p 1 0 0
chr5:177483895|177484164 hsa-miR-6837-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6764-5p 0 1 0
chr5:177483895|177484164 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:177483895|177484164
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence LARALLYLCCLQDAHPEQGLLHGGGRALLRARYPLASEGEEGWCMGQA
Nucleotide Sequence CTGGCACGTGCACTGCTTTACCTGTGCTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGGTACCCACTGGCCAGTGAGGGTGAGGAGGGATGGTGCATGGGGCAGGCATGA
CircID chr5:177483895|177484164
ORF Type ORF2
Protein Length 68
Nucleotide Length 204
Protein Sequence MEEGVPYCERGTHWPVRVRRDGAWGRHESRSSFSLPPFSDYEKMFGTKCHGCDFKIDAGDRFLEALGF
Nucleotide Sequence ATGGAGGAGGGCGTGCCCTATTGCGAGCGAGGTACCCACTGGCCAGTGAGGGTGAGGAGGGATGGTGCATGGGGCAGGCATGAATCCAGGTCCTCTTTCTCTCTGCCCCCATTCTCAGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGGGACCGCTTCCTGGAGGCCCTGGGCTTC
CircID chr5:177483895|177484164
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MPARRPSGTGPSTWRRACPIASEVPTGQ
Nucleotide Sequence CTGCCTGCAAGACGCCCATCCGGAACAGGGCCTTCTACATGGAGGAGGGCGTGCCCTATTGCGAGCGAGGTACCCACTGGCCAGTGA
CircID chr5:177483895|177484164
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MVHGAGMNPGPLSLCPHSQTMRRCLARNAMAVTSRSTLGTASWRPWAS
Nucleotide Sequence ATGGTGCATGGGGCAGGCATGAATCCAGGTCCTCTTTCTCTCTGCCCCCATTCTCAGACTATGAGAAGATGTTTGGCACGAAATGCCATGGCTGTGACTTCAAGATCGACGCTGGGGACCGCTTCCTGGAGGCCCTGGGCTTCA
CircID chr5:177483895|177484164
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence LKPRASRKRSPASILKSQPWHFVPNIFS
Nucleotide Sequence CTGAAGCCCAGGGCCTCCAGGAAGCGGTCCCCAGCGTCGATCTTGAAGTCACAGCCATGGCATTTCGTGCCAAACATCTTCTCATAG
CircID chr5:177483895|177484164
ORF Type ORF6
Protein Length 54
Nucleotide Length 165
Protein Sequence MRMGAERKRTWIHACPMHHPSSPSLASGYLARNRARPPPCRRPCSGWASCRQHR
Nucleotide Sequence CTGAGAATGGGGGCAGAGAGAAAGAGGACCTGGATTCATGCCTGCCCCATGCACCATCCCTCCTCACCCTCACTGGCCAGTGGGTACCTCGCTCGCAATAGGGCACGCCCTCCTCCATGTAGAAGGCCCTGTTCCGGATGGGCGTCTTGCAGGCAGCACAGGTAA
CircID chr5:177483895|177484164
ORF Type ORF7
Protein Length 48
Nucleotide Length 144
Protein Sequence MPAPCTIPPHPHWPVGTSLAIGHALLHVEGPVPDGRLAGSTGKAVHVP
Nucleotide Sequence ATGCCTGCCCCATGCACCATCCCTCCTCACCCTCACTGGCCAGTGGGTACCTCGCTCGCAATAGGGCACGCCCTCCTCCATGTAGAAGGCCCTGTTCCGGATGGGCGTCTTGCAGGCAGCACAGGTAAAGCAGTGCACGTGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab