CircRNA Information

General Information
circRNA Basic Information
CircID chr5:177594160|177595294
Strand +
CircType exon
Host Gene ENSG00000184840.10;
Algorism CIRI2;
Sequence TGGTCTGCCGGAAGCGCTCCTCTCGCCACCGCTGGTAGTTCTGCTCTTTCTGGATCTGCTCCACTTGTTCCACCAGCTGTCGCACTCGTAGCTGCAACTCACTCAACTTGTCTTTAGCAGCAATTTCTGCATAGTCATTGGCATGTTCACCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:177594160|177595294 hsa-miR-571 0 0 1
chr5:177594160|177595294 hsa-miR-634 0 0 1
chr5:177594160|177595294 hsa-miR-1301-5p 0 0 1
chr5:177594160|177595294 hsa-miR-1301-3p 0 0 1
chr5:177594160|177595294 hsa-miR-298 0 0 1
chr5:177594160|177595294 hsa-miR-1180-5p 0 0 1
chr5:177594160|177595294 hsa-miR-1180-3p 0 0 1
chr5:177594160|177595294 hsa-miR-1276 0 0 1
chr5:177594160|177595294 hsa-miR-302f 0 0 1
chr5:177594160|177595294 hsa-miR-1207-3p 0 0 1
chr5:177594160|177595294 hsa-miR-138 0 0 1
chr5:177594160|177595294 hsa-miR-219-1-3p 0 0 1
chr5:177594160|177595294 hsa-miR-3174 0 1 0
chr5:177594160|177595294 hsa-miR-4298 1 1 0
chr5:177594160|177595294 hsa-miR-3665 1 0 0
chr5:177594160|177595294 hsa-miR-3135b 1 0 0
chr5:177594160|177595294 hsa-miR-4468 0 1 0
chr5:177594160|177595294 hsa-miR-4507 1 0 0
chr5:177594160|177595294 hsa-miR-3960 1 0 0
chr5:177594160|177595294 hsa-miR-4660 1 0 0
chr5:177594160|177595294 hsa-miR-4688 1 0 0
chr5:177594160|177595294 hsa-miR-4739 1 0 0
chr5:177594160|177595294 hsa-miR-5047 0 1 0
chr5:177594160|177595294 hsa-miR-5090 1 0 0
chr5:177594160|177595294 hsa-miR-5100 1 0 0
chr5:177594160|177595294 hsa-miR-5681a 0 1 0
chr5:177594160|177595294 hsa-miR-6068 1 0 0
chr5:177594160|177595294 hsa-miR-6081 1 1 0
chr5:177594160|177595294 hsa-miR-6165 1 0 0
chr5:177594160|177595294 hsa-miR-12115 1 1 0
chr5:177594160|177595294 hsa-miR-12117 1 1 0
chr5:177594160|177595294 hsa-miR-122-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4687-3p 1 0 0
chr5:177594160|177595294 hsa-miR-8071 1 0 0
chr5:177594160|177595294 hsa-miR-6880-5p 1 1 0
chr5:177594160|177595294 hsa-miR-7847-3p 1 0 0
chr5:177594160|177595294 hsa-miR-6850-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6786-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6516-5p 0 1 0
chr5:177594160|177595294 hsa-miR-4732-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4787-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6789-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6800-5p 0 1 0
chr5:177594160|177595294 hsa-miR-574-5p 1 0 0
chr5:177594160|177595294 hsa-miR-423-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4746-3p 1 0 0
chr5:177594160|177595294 hsa-miR-5585-5p 1 0 0
chr5:177594160|177595294 hsa-miR-10400-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6812-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6865-5p 0 1 0
chr5:177594160|177595294 hsa-miR-1343-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6743-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6815-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6879-5p 1 0 0
chr5:177594160|177595294 hsa-miR-7111-5p 1 0 0
chr5:177594160|177595294 hsa-miR-328-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4632-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4649-5p 0 1 0
chr5:177594160|177595294 hsa-miR-4745-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6887-5p 1 0 0
chr5:177594160|177595294 hsa-miR-939-5p 1 0 0
chr5:177594160|177595294 hsa-miR-1238-5p 1 0 0
chr5:177594160|177595294 hsa-miR-4758-5p 1 0 0
chr5:177594160|177595294 hsa-miR-6766-5p 1 0 0
chr5:177594160|177595294 hsa-miR-3184-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:177594160|177595294
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPEALLSPPLVVLLFLDLLHLFHQLSHS
Nucleotide Sequence CTGCCGGAAGCGCTCCTCTCGCCACCGCTGGTAGTTCTGCTCTTTCTGGATCTGCTCCACTTGTTCCACCAGCTGTCGCACTCGTAG
CircID chr5:177594160|177595294
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQT
Nucleotide Sequence TTGAGTGAGTTGCAGCTACGAGTGCGACAGCTGGTGGAACAAGTGGAGCAGATCCAGAAAGAGCAGAACTACCAGCGGTGGCGAGAGGAGCGCTTCCGGCAGACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab