CircRNA Information

General Information
circRNA Basic Information
CircID chr5:177595570|177595796
Strand +
CircType exon
Host Gene ENSG00000184840.10;
Algorism CIRI2;
Sequence CTGCTCAAAACCCTAAGTTAGCAAAGGAAGACAGAAGACTGGCTTGCCTGCCCATTCCCCTCCCCCCACCCCCAACAGCAGCCTCACATCCCTGATCAGTAACACTGTGATTCTGAGGTGCCAAGAGGAGGGGCTTTACCAGCCCTTGGGTGATTACTACCAAACGGCCCAGAGGCCAGAGAGAGAGGGCAGGAATTTGCCCCACTACCTGCTCAGTATTAGCCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:177595570|177595796 hsa-miR-27a-5p 0 0 1
chr5:177595570|177595796 hsa-miR-27a-3p 0 0 1
chr5:177595570|177595796 hsa-miR-96-5p 0 0 1
chr5:177595570|177595796 hsa-miR-96-3p 0 0 1
chr5:177595570|177595796 hsa-miR-200b-5p 0 0 1
chr5:177595570|177595796 hsa-miR-200b-3p 0 0 1
chr5:177595570|177595796 hsa-miR-27b-5p 0 0 1
chr5:177595570|177595796 hsa-miR-27b-3p 0 0 1
chr5:177595570|177595796 hsa-miR-200c-5p 0 0 1
chr5:177595570|177595796 hsa-miR-200c-3p 0 0 1
chr5:177595570|177595796 hsa-miR-34b-5p 0 0 1
chr5:177595570|177595796 hsa-miR-34b-3p 0 0 1
chr5:177595570|177595796 hsa-miR-383-5p 0 0 1
chr5:177595570|177595796 hsa-miR-383-3p 0 0 1
chr5:177595570|177595796 hsa-miR-326 0 1 1
chr5:177595570|177595796 hsa-miR-196b-5p 0 0 1
chr5:177595570|177595796 hsa-miR-196b-3p 0 0 1
chr5:177595570|177595796 hsa-miR-429 0 0 1
chr5:177595570|177595796 hsa-miR-575 0 0 1
chr5:177595570|177595796 hsa-miR-608 1 0 1
chr5:177595570|177595796 hsa-miR-612 1 0 1
chr5:177595570|177595796 hsa-miR-1271-5p 0 0 1
chr5:177595570|177595796 hsa-miR-1271-3p 0 0 1
chr5:177595570|177595796 hsa-miR-1294 0 0 1
chr5:177595570|177595796 hsa-miR-1275 0 0 1
chr5:177595570|177595796 hsa-miR-486-3p 0 0 1
chr5:177595570|177595796 hsa-miR-296-3p 0 1 1
chr5:177595570|177595796 hsa-miR-485-5p 0 0 1
chr5:177595570|177595796 hsa-miR-330-5p 0 1 1
chr5:177595570|177595796 hsa-miR-128 0 0 1
chr5:177595570|177595796 hsa-miR-1285 0 0 1
chr5:177595570|177595796 hsa-miR-196a 0 0 1
chr5:177595570|177595796 hsa-miR-658 1 0 0
chr5:177595570|177595796 hsa-miR-762 1 0 0
chr5:177595570|177595796 hsa-miR-1268a 1 0 0
chr5:177595570|177595796 hsa-miR-3147 1 0 0
chr5:177595570|177595796 hsa-miR-4316 0 1 0
chr5:177595570|177595796 hsa-miR-4270 1 0 0
chr5:177595570|177595796 hsa-miR-1268b 1 0 0
chr5:177595570|177595796 hsa-miR-4425 1 0 0
chr5:177595570|177595796 hsa-miR-4498 1 1 0
chr5:177595570|177595796 hsa-miR-4525 1 1 0
chr5:177595570|177595796 hsa-miR-4651 1 1 0
chr5:177595570|177595796 hsa-miR-4706 1 0 0
chr5:177595570|177595796 hsa-miR-5193 0 1 0
chr5:177595570|177595796 hsa-miR-5572 1 0 0
chr5:177595570|177595796 hsa-miR-5698 0 1 0
chr5:177595570|177595796 hsa-miR-5787 1 0 0
chr5:177595570|177595796 hsa-miR-6086 1 0 0
chr5:177595570|177595796 hsa-miR-12128 0 1 0
chr5:177595570|177595796 hsa-miR-12133 0 1 0
chr5:177595570|177595796 hsa-miR-128-3p 0 1 0
chr5:177595570|177595796 hsa-miR-4433b-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6747-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4433a-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6861-5p 1 0 0
chr5:177595570|177595796 hsa-miR-7106-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6825-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6894-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4687-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6728-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6757-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6880-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4474-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6759-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6873-3p 0 1 0
chr5:177595570|177595796 hsa-miR-7110-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6817-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6716-5p 1 1 0
chr5:177595570|177595796 hsa-miR-3151-5p 1 1 0
chr5:177595570|177595796 hsa-miR-1292-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6748-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6829-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6732-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6798-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6782-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6786-5p 1 0 0
chr5:177595570|177595796 hsa-miR-7109-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6823-5p 1 0 0
chr5:177595570|177595796 hsa-miR-3191-5p 0 1 0
chr5:177595570|177595796 hsa-miR-4787-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4667-3p 0 1 0
chr5:177595570|177595796 hsa-miR-4446-3p 0 1 0
chr5:177595570|177595796 hsa-miR-149-3p 1 1 0
chr5:177595570|177595796 hsa-miR-6781-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6769a-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6877-5p 1 0 0
chr5:177595570|177595796 hsa-miR-5010-5p 1 1 0
chr5:177595570|177595796 hsa-miR-423-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6887-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6814-5p 0 1 0
chr5:177595570|177595796 hsa-miR-216a-3p 0 1 0
chr5:177595570|177595796 hsa-miR-4749-3p 0 1 0
chr5:177595570|177595796 hsa-miR-2277-5p 1 0 0
chr5:177595570|177595796 hsa-miR-1207-5p 1 0 0
chr5:177595570|177595796 hsa-miR-1233-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4763-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6769b-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6778-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6812-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6816-5p 1 0 0
chr5:177595570|177595796 hsa-miR-1343-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6752-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6756-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6803-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6819-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6842-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6851-5p 1 0 0
chr5:177595570|177595796 hsa-miR-7110-5p 1 1 0
chr5:177595570|177595796 hsa-miR-1249-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6722-3p 1 0 0
chr5:177595570|177595796 hsa-miR-6751-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6763-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6779-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6879-5p 1 0 0
chr5:177595570|177595796 hsa-miR-7111-5p 1 1 0
chr5:177595570|177595796 hsa-miR-320a-5p 0 1 0
chr5:177595570|177595796 hsa-miR-3620-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4728-5p 1 1 0
chr5:177595570|177595796 hsa-miR-5196-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6780b-5p 1 0 0
chr5:177595570|177595796 hsa-miR-1237-5p 1 0 0
chr5:177595570|177595796 hsa-miR-328-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4649-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6777-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6794-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6795-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6848-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6887-5p 1 1 0
chr5:177595570|177595796 hsa-miR-6885-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6511b-5p 1 0 0
chr5:177595570|177595796 hsa-miR-4665-5p 1 0 0
chr5:177595570|177595796 hsa-miR-6877-3p 0 1 0
chr5:177595570|177595796 hsa-miR-4472 1 0 0
chr5:177595570|177595796 hsa-miR-4757-5p 0 1 0
chr5:177595570|177595796 hsa-miR-3059-5p 0 1 0
chr5:177595570|177595796 hsa-miR-4723-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6764-5p 0 1 0
chr5:177595570|177595796 hsa-miR-5699-3p 0 1 0
chr5:177595570|177595796 hsa-miR-6507-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:177595570|177595796
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MPAHSPPPTPNSSLTSLISNTVILRCQEEGLYQPLGDYYQTAQRPEREGRNLPHYLLSISQ
Nucleotide Sequence TTGCCTGCCCATTCCCCTCCCCCCACCCCCAACAGCAGCCTCACATCCCTGATCAGTAACACTGTGATTCTGAGGTGCCAAGAGGAGGGGCTTTACCAGCCCTTGGGTGATTACTACCAAACGGCCCAGAGGCCAGAGAGAGAGGGCAGGAATTTGCCCCACTACCTGCTCAGTATTAGCCAA
CircID chr5:177595570|177595796
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MASGPFGSNHPRAGKAPPLGTSESQCY
Nucleotide Sequence CTGGCCTCTGGGCCGTTTGGTAGTAATCACCCAAGGGCTGGTAAAGCCCCTCCTCTTGGCACCTCAGAATCACAGTGTTACTGA
CircID chr5:177595570|177595796
ORF Type ORF3
Protein Length 73
Nucleotide Length 222
Protein Sequence LANTEQVVGQIPALSLWPLGRLVVITQGLVKPLLLAPQNHSVTDQGCEAAVGGGGRGMGRQASLLSSFANLGF
Nucleotide Sequence TTGGCTAATACTGAGCAGGTAGTGGGGCAAATTCCTGCCCTCTCTCTCTGGCCTCTGGGCCGTTTGGTAGTAATCACCCAAGGGCTGGTAAAGCCCCTCCTCTTGGCACCTCAGAATCACAGTGTTACTGATCAGGGATGTGAGGCTGCTGTTGGGGGTGGGGGGAGGGGAATGGGCAGGCAAGCCAGTCTTCTGTCTTCCTTTGCTAACTTAGGGTTTTGA
CircID chr5:177595570|177595796
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MIRDVRLLLGVGGGEWAGKPVFCLPLLT
Nucleotide Sequence CTGATCAGGGATGTGAGGCTGCTGTTGGGGGTGGGGGGAGGGGAATGGGCAGGCAAGCCAGTCTTCTGTCTTCCTTTGCTAACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab