CircRNA Information

General Information
circRNA Basic Information
CircID chr5:179617989|179618172
Strand -
CircType exon
Host Gene ENSG00000169045.16;
Algorism CIRI2;
Sequence CTCTTCCAAATCTATCTGACCCAAATCCATAGCCATCATTATAGCCATTGTAATCATCATAGCCTCCATAGCCTGAAAGACAAAGTACAATCAATCAAATAAAACACCTAGACAAAGGAACAGACGACTTGCCGAACCTTACGAATCCTCACGTACCTCCACCATAAGCACCACGCCTCATCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:179617989|179618172 hsa-miR-484 0 0 1
chr5:179617989|179618172 hsa-miR-511-5p 0 0 1
chr5:179617989|179618172 hsa-miR-511-3p 0 0 1
chr5:179617989|179618172 hsa-miR-584-5p 0 0 1
chr5:179617989|179618172 hsa-miR-584-3p 0 0 1
chr5:179617989|179618172 hsa-miR-650 0 0 1
chr5:179617989|179618172 hsa-miR-1290 0 0 1
chr5:179617989|179618172 hsa-miR-1246 0 0 1
chr5:179617989|179618172 hsa-miR-1255a 0 0 1
chr5:179617989|179618172 hsa-miR-1272 1 0 1
chr5:179617989|179618172 hsa-miR-1322 0 0 1
chr5:179617989|179618172 hsa-miR-876-5p 0 0 1
chr5:179617989|179618172 hsa-miR-508-3p 0 0 1
chr5:179617989|179618172 hsa-miR-1255b 0 0 1
chr5:179617989|179618172 hsa-miR-7 0 0 1
chr5:179617989|179618172 hsa-miR-1185 0 0 1
chr5:179617989|179618172 hsa-miR-219-5p 0 0 1
chr5:179617989|179618172 hsa-miR-608 1 0 0
chr5:179617989|179618172 hsa-miR-760 1 0 0
chr5:179617989|179618172 hsa-miR-1294 1 0 0
chr5:179617989|179618172 hsa-miR-1268a 1 0 0
chr5:179617989|179618172 hsa-miR-2861 1 0 0
chr5:179617989|179618172 hsa-miR-3197 1 0 0
chr5:179617989|179618172 hsa-miR-4298 1 0 0
chr5:179617989|179618172 hsa-miR-4259 1 0 0
chr5:179617989|179618172 hsa-miR-3612 1 0 0
chr5:179617989|179618172 hsa-miR-3911 1 0 0
chr5:179617989|179618172 hsa-miR-1268b 1 0 0
chr5:179617989|179618172 hsa-miR-4450 1 0 0
chr5:179617989|179618172 hsa-miR-4458 1 0 0
chr5:179617989|179618172 hsa-miR-4721 1 0 0
chr5:179617989|179618172 hsa-miR-4736 1 0 0
chr5:179617989|179618172 hsa-miR-4748 1 0 0
chr5:179617989|179618172 hsa-miR-5787 1 0 0
chr5:179617989|179618172 hsa-miR-378j 1 0 0
chr5:179617989|179618172 hsa-miR-8075 1 0 0
chr5:179617989|179618172 hsa-miR-12114 1 0 0
chr5:179617989|179618172 hsa-miR-4433b-3p 1 0 0
chr5:179617989|179618172 hsa-miR-6765-5p 1 0 0
chr5:179617989|179618172 hsa-miR-125b-1-3p 1 0 0
chr5:179617989|179618172 hsa-miR-6857-5p 1 0 0
chr5:179617989|179618172 hsa-miR-4687-3p 1 0 0
chr5:179617989|179618172 hsa-miR-7114-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6880-5p 1 0 0
chr5:179617989|179618172 hsa-miR-7847-3p 1 0 0
chr5:179617989|179618172 hsa-miR-6744-5p 1 0 0
chr5:179617989|179618172 hsa-miR-3064-5p 1 0 0
chr5:179617989|179618172 hsa-miR-8069 1 0 0
chr5:179617989|179618172 hsa-miR-6793-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6805-5p 1 0 0
chr5:179617989|179618172 hsa-miR-1224-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6782-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6821-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6786-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6740-5p 1 0 0
chr5:179617989|179618172 hsa-miR-1229-5p 1 0 0
chr5:179617989|179618172 hsa-let-7b-5p 1 0 0
chr5:179617989|179618172 hsa-miR-485-5p 1 0 0
chr5:179617989|179618172 hsa-miR-664b-5p 1 0 0
chr5:179617989|179618172 hsa-let-7c-5p 1 0 0
chr5:179617989|179618172 hsa-miR-501-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6769b-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6756-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6769a-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6803-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6819-5p 1 0 0
chr5:179617989|179618172 hsa-miR-11181-3p 1 0 0
chr5:179617989|179618172 hsa-miR-6751-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6763-5p 1 0 0
chr5:179617989|179618172 hsa-miR-7111-5p 1 0 0
chr5:179617989|179618172 hsa-miR-4649-5p 1 0 0
chr5:179617989|179618172 hsa-miR-4726-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6729-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6846-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6848-5p 1 0 0
chr5:179617989|179618172 hsa-miR-6858-5p 1 0 0
chr5:179617989|179618172 hsa-miR-7151-3p 1 0 0
chr5:179617989|179618172 hsa-miR-6766-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:179617989|179618172
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MTQIHSHHYSHCNHHSLHSLKDKVQSIK
Nucleotide Sequence CTGACCCAAATCCATAGCCATCATTATAGCCATTGTAATCATCATAGCCTCCATAGCCTGAAAGACAAAGTACAATCAATCAAATAA
CircID chr5:179617989|179618172
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MIVLCLSGYGGYDDYNGYNDGYGFGSDRFGR
Nucleotide Sequence TTGATTGTACTTTGTCTTTCAGGCTATGGAGGCTATGATGATTACAATGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGA
CircID chr5:179617989|179618172
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MYFVFQAMEAMMITMAIMMAMDLGQIDLEE
Nucleotide Sequence TTGTACTTTGTCTTTCAGGCTATGGAGGCTATGATGATTACAATGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab