CircRNA Information

General Information
circRNA Basic Information
CircID chr5:179729825|179730018
Strand +
CircType exon
Host Gene ENSG00000127022.13;
Algorism CIRI2;
Sequence CTAAGATCACTTTTTTAAAAATTCTACAAGCCACGTTAAAAAAAAATTTGAACAGGACTGCTTTATTGTGTAATTTATGACACAACTGTTACATGAATTGCAAATGAAGGCTTAAAATATATAGCAGCTACAAAAAAAATCAGATAACTCATGCTTCATGTCACTCCTCCCACAAATACTTCTAGTCTGTTCAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:179729825|179730018 hsa-miR-22-5p 0 0 1
chr5:179729825|179730018 hsa-miR-22-3p 0 0 1
chr5:179729825|179730018 hsa-miR-205-5p 0 0 1
chr5:179729825|179730018 hsa-miR-205-3p 0 0 1
chr5:179729825|179730018 hsa-miR-212-5p 0 0 1
chr5:179729825|179730018 hsa-miR-212-3p 0 0 1
chr5:179729825|179730018 hsa-miR-132-5p 0 0 1
chr5:179729825|179730018 hsa-miR-132-3p 0 0 1
chr5:179729825|179730018 hsa-miR-579-5p 0 0 1
chr5:179729825|179730018 hsa-miR-579-3p 0 0 1
chr5:179729825|179730018 hsa-miR-592 0 0 1
chr5:179729825|179730018 hsa-miR-597-5p 0 0 1
chr5:179729825|179730018 hsa-miR-597-3p 0 0 1
chr5:179729825|179730018 hsa-miR-599 0 0 1
chr5:179729825|179730018 hsa-miR-607 0 0 1
chr5:179729825|179730018 hsa-miR-765 0 1 1
chr5:179729825|179730018 hsa-miR-129-5p 0 0 1
chr5:179729825|179730018 hsa-miR-450b-5p 0 0 1
chr5:179729825|179730018 hsa-miR-194 0 0 1
chr5:179729825|179730018 hsa-miR-1245 0 0 1
chr5:179729825|179730018 hsa-miR-3689c 1 1 0
chr5:179729825|179730018 hsa-miR-4494 1 0 0
chr5:179729825|179730018 hsa-miR-4689 1 0 0
chr5:179729825|179730018 hsa-miR-4706 1 0 0
chr5:179729825|179730018 hsa-miR-4739 1 0 0
chr5:179729825|179730018 hsa-miR-5698 1 0 0
chr5:179729825|179730018 hsa-miR-6133 1 0 0
chr5:179729825|179730018 hsa-miR-8060 0 1 0
chr5:179729825|179730018 hsa-miR-143-3p 1 0 0
chr5:179729825|179730018 hsa-miR-6734-5p 1 0 0
chr5:179729825|179730018 hsa-miR-7106-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6799-5p 1 0 0
chr5:179729825|179730018 hsa-miR-1236-5p 0 1 0
chr5:179729825|179730018 hsa-miR-5187-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6759-5p 1 0 0
chr5:179729825|179730018 hsa-miR-7109-5p 1 0 0
chr5:179729825|179730018 hsa-miR-149-3p 1 0 0
chr5:179729825|179730018 hsa-miR-1233-5p 1 1 0
chr5:179729825|179730018 hsa-miR-3689b-3p 1 1 0
chr5:179729825|179730018 hsa-miR-6778-5p 1 1 0
chr5:179729825|179730018 hsa-miR-6812-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6756-5p 1 0 0
chr5:179729825|179730018 hsa-miR-10401-5p 1 0 0
chr5:179729825|179730018 hsa-miR-11181-3p 1 0 0
chr5:179729825|179730018 hsa-miR-1249-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6763-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6780a-5p 1 1 0
chr5:179729825|179730018 hsa-miR-7111-5p 1 0 0
chr5:179729825|179730018 hsa-miR-4728-5p 1 0 0
chr5:179729825|179730018 hsa-miR-3689a-3p 1 1 0
chr5:179729825|179730018 hsa-miR-6795-5p 1 0 0
chr5:179729825|179730018 hsa-miR-6883-5p 1 1 0
chr5:179729825|179730018 hsa-miR-4723-5p 1 0 0
chr5:179729825|179730018 hsa-miR-4769-5p 1 0 0
chr5:179729825|179730018 hsa-miR-7151-3p 1 0 0
chr5:179729825|179730018 hsa-miR-6785-5p 1 0 0
chr5:179729825|179730018 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:179729825|179730018
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MSYLIFFVAAIYFKPSFAIHVTVVS
Nucleotide Sequence ATGAGTTATCTGATTTTTTTTGTAGCTGCTATATATTTTAAGCCTTCATTTGCAATTCATGTAACAGTTGTGTCATAA
CircID chr5:179729825|179730018
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MCHKLHNKAVLFKFFFNVACRIFKKVIL
Nucleotide Sequence TTGTGTCATAAATTACACAATAAAGCAGTCCTGTTCAAATTTTTTTTTAACGTGGCTTGTAGAATTTTTAAAAAAGTGATCTTA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab