CircRNA Information

General Information
circRNA Basic Information
CircID chr5:179798235|179798551
Strand +
CircType exon
Host Gene ENSG00000161013.15;
Algorism CIRI2;
Sequence AAGCTCTTCAACACGTCTGTGGAGGTGCTGCCCTTCGACGTAAGTTCGGTGGGTGTGGTGTGCACTGAAGCCGGGCCTCCTGTGACCACCTGCCTCAGCCCTTGATTCTGCCCCCAGAACCCTCAGTCAGACAAGGAGGCCCTGCAGGAGGGCCGCACCGCCACCCTCCGGTACCCTCGGAGCCCCGACGGCTACCTCCAGATCGGTGGGTAGGGTTTGGGGGAGAGCGTGGGCTGGGGTTCAGGGACACCCTCTCACCACTGCCCTCCCACAGGCTCCTTCTACAAGGGAGTGGCAGAGGGAGAGGTGGACCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:179798235|179798551 hsa-let-7b-5p 0 0 1
chr5:179798235|179798551 hsa-let-7b-3p 0 0 1
chr5:179798235|179798551 hsa-let-7c-5p 0 0 1
chr5:179798235|179798551 hsa-let-7c-3p 0 0 1
chr5:179798235|179798551 hsa-let-7d-5p 0 0 1
chr5:179798235|179798551 hsa-let-7d-3p 0 0 1
chr5:179798235|179798551 hsa-let-7e-5p 0 0 1
chr5:179798235|179798551 hsa-let-7e-3p 0 0 1
chr5:179798235|179798551 hsa-miR-98-5p 0 0 1
chr5:179798235|179798551 hsa-miR-98-3p 0 0 1
chr5:179798235|179798551 hsa-miR-148a-5p 0 0 1
chr5:179798235|179798551 hsa-miR-148a-3p 0 0 1
chr5:179798235|179798551 hsa-miR-34a-5p 0 0 1
chr5:179798235|179798551 hsa-miR-34a-3p 0 0 1
chr5:179798235|179798551 hsa-let-7g-5p 0 0 1
chr5:179798235|179798551 hsa-let-7g-3p 0 0 1
chr5:179798235|179798551 hsa-let-7i-5p 0 0 1
chr5:179798235|179798551 hsa-let-7i-3p 0 0 1
chr5:179798235|179798551 hsa-miR-152-5p 0 0 1
chr5:179798235|179798551 hsa-miR-152-3p 0 0 1
chr5:179798235|179798551 hsa-miR-148b-5p 0 0 1
chr5:179798235|179798551 hsa-miR-148b-3p 0 0 1
chr5:179798235|179798551 hsa-miR-345-5p 0 0 1
chr5:179798235|179798551 hsa-miR-345-3p 0 0 1
chr5:179798235|179798551 hsa-miR-449a 0 0 1
chr5:179798235|179798551 hsa-miR-623 0 1 1
chr5:179798235|179798551 hsa-miR-632 0 0 1
chr5:179798235|179798551 hsa-miR-637 1 1 1
chr5:179798235|179798551 hsa-miR-449b-5p 0 0 1
chr5:179798235|179798551 hsa-miR-449b-3p 0 0 1
chr5:179798235|179798551 hsa-miR-653-5p 0 0 1
chr5:179798235|179798551 hsa-miR-653-3p 0 0 1
chr5:179798235|179798551 hsa-miR-675-5p 0 0 1
chr5:179798235|179798551 hsa-miR-675-3p 0 0 1
chr5:179798235|179798551 hsa-miR-940 0 0 1
chr5:179798235|179798551 hsa-miR-1231 0 0 1
chr5:179798235|179798551 hsa-miR-1205 0 1 1
chr5:179798235|179798551 hsa-miR-1827 0 0 1
chr5:179798235|179798551 hsa-miR-486-3p 1 1 1
chr5:179798235|179798551 hsa-miR-361-3p 0 0 1
chr5:179798235|179798551 hsa-miR-513a-5p 0 0 1
chr5:179798235|179798551 hsa-miR-125a-5p 0 0 1
chr5:179798235|179798551 hsa-miR-34c-5p 0 0 1
chr5:179798235|179798551 hsa-miR-1280 0 0 1
chr5:179798235|179798551 hsa-miR-323-5p 0 0 1
chr5:179798235|179798551 hsa-miR-125b 0 0 1
chr5:179798235|179798551 hsa-miR-642 0 0 1
chr5:179798235|179798551 hsa-miR-220c 0 0 1
chr5:179798235|179798551 hsa-let-7a 0 0 1
chr5:179798235|179798551 hsa-let-7f 0 0 1
chr5:179798235|179798551 hsa-miR-516b 0 0 1
chr5:179798235|179798551 hsa-miR-618 0 1 0
chr5:179798235|179798551 hsa-miR-663a 1 0 0
chr5:179798235|179798551 hsa-miR-762 1 1 0
chr5:179798235|179798551 hsa-miR-1976 0 1 0
chr5:179798235|179798551 hsa-miR-3132 1 0 0
chr5:179798235|179798551 hsa-miR-3196 1 0 0
chr5:179798235|179798551 hsa-miR-3938 0 1 0
chr5:179798235|179798551 hsa-miR-4439 0 1 0
chr5:179798235|179798551 hsa-miR-4458 0 1 0
chr5:179798235|179798551 hsa-miR-4463 1 0 0
chr5:179798235|179798551 hsa-miR-4466 1 0 0
chr5:179798235|179798551 hsa-miR-4467 1 0 0
chr5:179798235|179798551 hsa-miR-4469 0 1 0
chr5:179798235|179798551 hsa-miR-4488 1 0 0
chr5:179798235|179798551 hsa-miR-4512 0 1 0
chr5:179798235|179798551 hsa-miR-4513 1 0 0
chr5:179798235|179798551 hsa-miR-4656 1 1 0
chr5:179798235|179798551 hsa-miR-4688 1 0 0
chr5:179798235|179798551 hsa-miR-4734 1 0 0
chr5:179798235|179798551 hsa-miR-4741 1 0 0
chr5:179798235|179798551 hsa-miR-5090 1 0 0
chr5:179798235|179798551 hsa-miR-5787 1 0 0
chr5:179798235|179798551 hsa-miR-6863 0 1 0
chr5:179798235|179798551 hsa-miR-8089 1 0 0
chr5:179798235|179798551 hsa-miR-12119 1 0 0
chr5:179798235|179798551 hsa-miR-12122 0 1 0
chr5:179798235|179798551 hsa-miR-4747-3p 0 1 0
chr5:179798235|179798551 hsa-miR-4731-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6765-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6892-3p 1 0 0
chr5:179798235|179798551 hsa-miR-6804-5p 0 1 0
chr5:179798235|179798551 hsa-miR-4695-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6727-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6721-5p 1 0 0
chr5:179798235|179798551 hsa-miR-197-5p 1 0 0
chr5:179798235|179798551 hsa-miR-5589-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6776-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6873-3p 0 1 0
chr5:179798235|179798551 hsa-miR-6849-3p 0 1 0
chr5:179798235|179798551 hsa-miR-7110-3p 0 1 0
chr5:179798235|179798551 hsa-miR-3180-3p 1 0 0
chr5:179798235|179798551 hsa-miR-6772-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6793-5p 1 0 0
chr5:179798235|179798551 hsa-miR-23a-5p 1 0 0
chr5:179798235|179798551 hsa-miR-5008-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6835-5p 1 1 0
chr5:179798235|179798551 hsa-miR-7109-5p 1 0 0
chr5:179798235|179798551 hsa-miR-1226-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6784-5p 1 0 0
chr5:179798235|179798551 hsa-miR-296-3p 1 0 0
chr5:179798235|179798551 hsa-miR-4650-3p 1 1 0
chr5:179798235|179798551 hsa-miR-6823-5p 1 0 0
chr5:179798235|179798551 hsa-miR-3677-3p 1 0 0
chr5:179798235|179798551 hsa-miR-4743-5p 1 0 0
chr5:179798235|179798551 hsa-miR-4787-5p 1 0 0
chr5:179798235|179798551 hsa-miR-4446-5p 1 1 0
chr5:179798235|179798551 hsa-miR-4446-3p 0 1 0
chr5:179798235|179798551 hsa-miR-149-3p 0 1 0
chr5:179798235|179798551 hsa-miR-941 0 1 0
chr5:179798235|179798551 hsa-miR-1306-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6781-5p 1 0 0
chr5:179798235|179798551 hsa-miR-516b-5p 0 1 0
chr5:179798235|179798551 hsa-miR-211-5p 0 1 0
chr5:179798235|179798551 hsa-miR-1236-3p 0 1 0
chr5:179798235|179798551 hsa-miR-7106-3p 0 1 0
chr5:179798235|179798551 hsa-miR-4638-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6867-3p 0 1 0
chr5:179798235|179798551 hsa-miR-6793-3p 1 1 0
chr5:179798235|179798551 hsa-miR-2276-5p 0 1 0
chr5:179798235|179798551 hsa-miR-4746-3p 1 1 0
chr5:179798235|179798551 hsa-miR-4283 0 1 0
chr5:179798235|179798551 hsa-miR-204-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6812-3p 0 1 0
chr5:179798235|179798551 hsa-miR-4727-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6761-3p 0 1 0
chr5:179798235|179798551 hsa-miR-6800-3p 0 1 0
chr5:179798235|179798551 hsa-miR-3162-3p 0 1 0
chr5:179798235|179798551 hsa-miR-10400-5p 1 0 0
chr5:179798235|179798551 hsa-miR-1233-5p 0 1 0
chr5:179798235|179798551 hsa-miR-1273h-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6778-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6816-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6870-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6893-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6775-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6743-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6756-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6803-5p 1 1 0
chr5:179798235|179798551 hsa-miR-6813-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6851-5p 1 1 0
chr5:179798235|179798551 hsa-miR-6751-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6780a-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6879-5p 0 1 0
chr5:179798235|179798551 hsa-miR-7111-5p 1 0 0
chr5:179798235|179798551 hsa-miR-4728-5p 0 1 0
chr5:179798235|179798551 hsa-miR-10396a-5p 1 0 0
chr5:179798235|179798551 hsa-miR-10396b-5p 1 0 0
chr5:179798235|179798551 hsa-miR-1237-5p 1 0 0
chr5:179798235|179798551 hsa-miR-1909-3p 1 0 0
chr5:179798235|179798551 hsa-miR-328-5p 1 1 0
chr5:179798235|179798551 hsa-miR-4632-5p 0 1 0
chr5:179798235|179798551 hsa-miR-4685-5p 1 0 0
chr5:179798235|179798551 hsa-miR-4745-3p 0 1 0
chr5:179798235|179798551 hsa-miR-6735-5p 1 1 0
chr5:179798235|179798551 hsa-miR-6846-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6848-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6883-5p 0 1 0
chr5:179798235|179798551 hsa-miR-4436b-3p 0 1 0
chr5:179798235|179798551 hsa-miR-4697-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6511a-5p 1 1 0
chr5:179798235|179798551 hsa-miR-7843-5p 0 1 0
chr5:179798235|179798551 hsa-miR-6791-3p 0 1 0
chr5:179798235|179798551 hsa-miR-4700-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6785-5p 0 1 0
chr5:179798235|179798551 hsa-miR-4667-5p 1 0 0
chr5:179798235|179798551 hsa-miR-6829-3p 0 1 0
chr5:179798235|179798551 hsa-miR-10394-5p 0 1 0
chr5:179798235|179798551 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:179798235|179798551
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MPFDVSSVGVVCTEAGPPVTTCLSP
Nucleotide Sequence CTGCCCTTCGACGTAAGTTCGGTGGGTGTGGTGTGCACTGAAGCCGGGCCTCCTGTGACCACCTGCCTCAGCCCTTGA
CircID chr5:179798235|179798551
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MGESVGWGSGTPSHHCPPTGSFYKGVAEGEVDP
Nucleotide Sequence TTGGGGGAGAGCGTGGGCTGGGGTTCAGGGACACCCTCTCACCACTGCCCTCCCACAGGCTCCTTCTACAAGGGAGTGGCAGAGGGAGAGGTGGACCCA
CircID chr5:179798235|179798551
ORF Type ORF3
Protein Length 76
Nucleotide Length 228
Protein Sequence MPQPLILPPEPSVRQGGPAGGPHRHPPVPSEPRRLPPDRWVGFGGERGLGFRDTLSPLPSHRLLLQGSGRGRGGPS
Nucleotide Sequence CTGCCTCAGCCCTTGATTCTGCCCCCAGAACCCTCAGTCAGACAAGGAGGCCCTGCAGGAGGGCCGCACCGCCACCCTCCGGTACCCTCGGAGCCCCGACGGCTACCTCCAGATCGGTGGGTAGGGTTTGGGGGAGAGCGTGGGCTGGGGTTCAGGGACACCCTCTCACCACTGCCCTCCCACAGGCTCCTTCTACAAGGGAGTGGCAGAGGGAGAGGTGGACCCAGC
CircID chr5:179798235|179798551
ORF Type ORF4
Protein Length 32
Nucleotide Length 96
Protein Sequence MRQVVTGGPASVHTTPTELTSKGSTSTDVLKS
Nucleotide Sequence CTGAGGCAGGTGGTCACAGGAGGCCCGGCTTCAGTGCACACCACACCCACCGAACTTACGTCGAAGGGCAGCACCTCCACAGACGTGTTGAAGAGC
CircID chr5:179798235|179798551
ORF Type ORF5
Protein Length 73
Nucleotide Length 222
Protein Sequence LGPPLPLPLPCRRSLWEGSGERVSLNPSPRSPPNPTHRSGGSRRGSEGTGGWRCGPPAGPPCLTEGSGGRIKG
Nucleotide Sequence CTGGGTCCACCTCTCCCTCTGCCACTCCCTTGTAGAAGGAGCCTGTGGGAGGGCAGTGGTGAGAGGGTGTCCCTGAACCCCAGCCCACGCTCTCCCCCAAACCCTACCCACCGATCTGGAGGTAGCCGTCGGGGCTCCGAGGGTACCGGAGGGTGGCGGTGCGGCCCTCCTGCAGGGCCTCCTTGTCTGACTGAGGGTTCTGGGGGCAGAATCAAGGGCTGA
CircID chr5:179798235|179798551
ORF Type ORF6
Protein Length 42
Nucleotide Length 126
Protein Sequence MRVLGAESRAEAGGHRRPGFSAHHTHRTYVEGQHLHRRVEEL
Nucleotide Sequence CTGAGGGTTCTGGGGGCAGAATCAAGGGCTGAGGCAGGTGGTCACAGGAGGCCCGGCTTCAGTGCACACCACACCCACCGAACTTACGTCGAAGGGCAGCACCTCCACAGACGTGTTGAAGAGCTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab