CircRNA Information

General Information
circRNA Basic Information
CircID chr5:179836595|179836766
Strand -
CircType exon
Host Gene ENSG00000161011.18;
Algorism CIRI2;
Sequence CACTTTTGCCCACCTCTTCTGCGTGCCCCTCTTCTGTCTCATAGTTGTGTTAAGCTTGCGTAGAATTGCAGGTCTCTGTACGGGCCAGTTTCTCTGCCTTCTTCCAGGATCAGGGGTTAGGGTGCAAGAAGCCATTTAGGGCAGCAAAACAAGTGACATGAAGGGAGGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:179836595|179836766 hsa-miR-205-5p 0 0 1
chr5:179836595|179836766 hsa-miR-205-3p 0 0 1
chr5:179836595|179836766 hsa-miR-135b-5p 0 0 1
chr5:179836595|179836766 hsa-miR-135b-3p 0 0 1
chr5:179836595|179836766 hsa-miR-193b-5p 0 0 1
chr5:179836595|179836766 hsa-miR-193b-3p 0 0 1
chr5:179836595|179836766 hsa-miR-522-5p 0 0 1
chr5:179836595|179836766 hsa-miR-522-3p 0 0 1
chr5:179836595|179836766 hsa-miR-668-5p 0 0 1
chr5:179836595|179836766 hsa-miR-668-3p 0 0 1
chr5:179836595|179836766 hsa-miR-298 0 1 1
chr5:179836595|179836766 hsa-miR-541-5p 0 0 1
chr5:179836595|179836766 hsa-miR-541-3p 0 0 1
chr5:179836595|179836766 hsa-miR-769-5p 0 1 1
chr5:179836595|179836766 hsa-miR-423-5p 1 1 1
chr5:179836595|179836766 hsa-miR-654-5p 0 0 1
chr5:179836595|179836766 hsa-miR-193a-3p 0 1 1
chr5:179836595|179836766 hsa-miR-7 0 0 1
chr5:179836595|179836766 hsa-miR-135a 0 0 1
chr5:179836595|179836766 hsa-miR-663a 1 0 0
chr5:179836595|179836766 hsa-miR-1470 1 0 0
chr5:179836595|179836766 hsa-miR-3185 0 1 0
chr5:179836595|179836766 hsa-miR-4298 1 1 0
chr5:179836595|179836766 hsa-miR-4253 1 0 0
chr5:179836595|179836766 hsa-miR-4287 0 1 0
chr5:179836595|179836766 hsa-miR-4656 1 0 0
chr5:179836595|179836766 hsa-miR-4672 1 0 0
chr5:179836595|179836766 hsa-miR-4688 1 1 0
chr5:179836595|179836766 hsa-miR-5194 1 0 0
chr5:179836595|179836766 hsa-miR-6076 1 0 0
chr5:179836595|179836766 hsa-miR-7703 1 0 0
chr5:179836595|179836766 hsa-miR-103a-2-5p 0 1 0
chr5:179836595|179836766 hsa-miR-4433b-3p 1 0 0
chr5:179836595|179836766 hsa-miR-6749-3p 1 0 0
chr5:179836595|179836766 hsa-miR-18a-3p 1 1 0
chr5:179836595|179836766 hsa-miR-4433a-3p 1 0 0
chr5:179836595|179836766 hsa-miR-6894-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6822-3p 1 0 0
chr5:179836595|179836766 hsa-miR-6873-5p 1 0 0
chr5:179836595|179836766 hsa-miR-4695-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6746-5p 1 0 0
chr5:179836595|179836766 hsa-miR-7845-5p 1 0 0
chr5:179836595|179836766 hsa-miR-1915-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6770-5p 0 1 0
chr5:179836595|179836766 hsa-miR-6760-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6815-3p 1 1 0
chr5:179836595|179836766 hsa-miR-1226-5p 1 0 0
chr5:179836595|179836766 hsa-miR-4738-3p 0 1 0
chr5:179836595|179836766 hsa-miR-937-5p 1 0 0
chr5:179836595|179836766 hsa-miR-4640-3p 1 0 0
chr5:179836595|179836766 hsa-miR-6500-3p 0 1 0
chr5:179836595|179836766 hsa-miR-6878-5p 0 1 0
chr5:179836595|179836766 hsa-miR-211-5p 1 0 0
chr5:179836595|179836766 hsa-miR-7152-3p 1 1 0
chr5:179836595|179836766 hsa-miR-6793-3p 1 0 0
chr5:179836595|179836766 hsa-miR-6773-3p 1 0 0
chr5:179836595|179836766 hsa-miR-204-5p 1 0 0
chr5:179836595|179836766 hsa-miR-135a-5p 0 1 0
chr5:179836595|179836766 hsa-miR-18b-3p 1 1 0
chr5:179836595|179836766 hsa-miR-500a-3p 1 0 0
chr5:179836595|179836766 hsa-miR-4520-3p 1 0 0
chr5:179836595|179836766 hsa-miR-3678-5p 0 1 0
chr5:179836595|179836766 hsa-miR-514a-3p 1 0 0
chr5:179836595|179836766 hsa-miR-1207-5p 1 1 0
chr5:179836595|179836766 hsa-miR-4763-3p 1 0 0
chr5:179836595|179836766 hsa-miR-1343-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6743-5p 1 1 0
chr5:179836595|179836766 hsa-miR-1249-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6808-5p 1 1 0
chr5:179836595|179836766 hsa-miR-6879-5p 1 1 0
chr5:179836595|179836766 hsa-miR-4685-3p 1 1 0
chr5:179836595|179836766 hsa-miR-4755-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6862-5p 1 0 0
chr5:179836595|179836766 hsa-miR-10526-3p 1 0 0
chr5:179836595|179836766 hsa-miR-328-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6735-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6738-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6794-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6858-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6887-5p 1 0 0
chr5:179836595|179836766 hsa-miR-6885-5p 1 0 0
chr5:179836595|179836766 hsa-miR-1910-3p 0 1 0
chr5:179836595|179836766 hsa-miR-6511a-5p 1 1 0
chr5:179836595|179836766 hsa-miR-6799-3p 1 0 0
chr5:179836595|179836766 hsa-miR-1914-3p 1 0 0
chr5:179836595|179836766 hsa-miR-3184-5p 1 1 0
chr5:179836595|179836766 hsa-miR-6756-3p 1 0 0
chr5:179836595|179836766 hsa-miR-103a-1-5p 0 1 0
chr5:179836595|179836766 hsa-miR-6814-3p 1 0 0
chr5:179836595|179836766 hsa-miR-10523-5p 1 0 0
chr5:179836595|179836766 hsa-miR-514b-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:179836595|179836766
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MRRIAGLCTGQFLCLLPGSGVRVQEAI
Nucleotide Sequence TTGCGTAGAATTGCAGGTCTCTGTACGGGCCAGTTTCTCTGCCTTCTTCCAGGATCAGGGGTTAGGGTGCAAGAAGCCATTTAG
CircID chr5:179836595|179836766
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MQVSVRASFSAFFQDQGLGCKKPFRAAKQVT
Nucleotide Sequence TTGCAGGTCTCTGTACGGGCCAGTTTCTCTGCCTTCTTCCAGGATCAGGGGTTAGGGTGCAAGAAGCCATTTAGGGCAGCAAAACAAGTGACATGA
CircID chr5:179836595|179836766
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MASCTLTPDPGRRQRNWPVQRPAILRKLNTTMRQKRGTQKRWAKV
Nucleotide Sequence ATGGCTTCTTGCACCCTAACCCCTGATCCTGGAAGAAGGCAGAGAAACTGGCCCGTACAGAGACCTGCAATTCTACGCAAGCTTAACACAACTATGAGACAGAAGAGGGGCACGCAGAAGAGGTGGGCAAAAGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab