CircRNA Information

General Information
circRNA Basic Information
CircID chr5:1798723|1798902
Strand +
CircType exon
Host Gene ENSG00000171421.11;
Algorism CIRI2;
Sequence CCTCTGCTCTATCTCAGTCGTCACACGGTGAAGCCTCGAGCCCTCTCCACATTTCTATTTGGATCCATTCGAGGTGCAGCCCCCGTGGCTGTGGAACCCGGGGCAGCAGTGCGCTCACTTCTCTCACCCGGCCTCCTGCCCCATCTGCTGCCTGCGCTGGGGTTCAAAAACAAGACTGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:1798723|1798902 hsa-miR-185-5p 0 0 1
chr5:1798723|1798902 hsa-miR-185-3p 0 0 1
chr5:1798723|1798902 hsa-miR-412-5p 0 0 1
chr5:1798723|1798902 hsa-miR-412-3p 0 0 1
chr5:1798723|1798902 hsa-miR-922 0 0 1
chr5:1798723|1798902 hsa-miR-486-3p 0 0 1
chr5:1798723|1798902 hsa-miR-339-3p 0 0 1
chr5:1798723|1798902 hsa-miR-324-3p 0 0 1
chr5:1798723|1798902 hsa-miR-637 1 0 0
chr5:1798723|1798902 hsa-miR-665 1 0 0
chr5:1798723|1798902 hsa-miR-1275 1 0 0
chr5:1798723|1798902 hsa-miR-1538 1 0 0
chr5:1798723|1798902 hsa-miR-1913 0 1 0
chr5:1798723|1798902 hsa-miR-2861 1 0 0
chr5:1798723|1798902 hsa-miR-3141 1 0 0
chr5:1798723|1798902 hsa-miR-3147 1 0 0
chr5:1798723|1798902 hsa-miR-3188 0 1 0
chr5:1798723|1798902 hsa-miR-320e 1 0 0
chr5:1798723|1798902 hsa-miR-3195 1 0 0
chr5:1798723|1798902 hsa-miR-3196 1 0 0
chr5:1798723|1798902 hsa-miR-4298 1 0 0
chr5:1798723|1798902 hsa-miR-4260 1 0 0
chr5:1798723|1798902 hsa-miR-3652 1 0 0
chr5:1798723|1798902 hsa-miR-3911 1 0 0
chr5:1798723|1798902 hsa-miR-3937 1 0 0
chr5:1798723|1798902 hsa-miR-4466 1 0 0
chr5:1798723|1798902 hsa-miR-4488 1 0 0
chr5:1798723|1798902 hsa-miR-4505 1 0 0
chr5:1798723|1798902 hsa-miR-2392 1 0 0
chr5:1798723|1798902 hsa-miR-4514 0 1 0
chr5:1798723|1798902 hsa-miR-4651 1 0 0
chr5:1798723|1798902 hsa-miR-4657 1 1 0
chr5:1798723|1798902 hsa-miR-4688 1 0 0
chr5:1798723|1798902 hsa-miR-4692 0 1 0
chr5:1798723|1798902 hsa-miR-4706 1 0 0
chr5:1798723|1798902 hsa-miR-4721 1 1 0
chr5:1798723|1798902 hsa-miR-5090 1 0 0
chr5:1798723|1798902 hsa-miR-5787 1 0 0
chr5:1798723|1798902 hsa-miR-6165 1 0 0
chr5:1798723|1798902 hsa-miR-8085 1 0 0
chr5:1798723|1798902 hsa-miR-128-1-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4731-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4433a-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6765-5p 1 0 0
chr5:1798723|1798902 hsa-miR-3150a-3p 0 1 0
chr5:1798723|1798902 hsa-miR-6894-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6510-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1227-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6089 1 1 0
chr5:1798723|1798902 hsa-miR-4695-5p 1 1 0
chr5:1798723|1798902 hsa-miR-6746-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4722-5p 1 1 0
chr5:1798723|1798902 hsa-miR-6727-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6806-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6721-5p 1 1 0
chr5:1798723|1798902 hsa-miR-6742-5p 1 0 0
chr5:1798723|1798902 hsa-miR-3180-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6805-5p 1 0 0
chr5:1798723|1798902 hsa-miR-23a-5p 0 1 0
chr5:1798723|1798902 hsa-miR-6798-5p 1 0 0
chr5:1798723|1798902 hsa-miR-3130-3p 0 1 0
chr5:1798723|1798902 hsa-miR-5008-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6786-5p 1 0 0
chr5:1798723|1798902 hsa-miR-5088-5p 1 1 0
chr5:1798723|1798902 hsa-miR-1226-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1229-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4640-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4691-3p 0 1 0
chr5:1798723|1798902 hsa-miR-1228-5p 1 0 0
chr5:1798723|1798902 hsa-miR-92b-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4713-3p 1 0 0
chr5:1798723|1798902 hsa-miR-4743-5p 1 0 0
chr5:1798723|1798902 hsa-miR-149-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6781-5p 1 0 0
chr5:1798723|1798902 hsa-miR-7112-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4707-5p 1 1 0
chr5:1798723|1798902 hsa-let-7e-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1304-5p 0 1 0
chr5:1798723|1798902 hsa-miR-4750-5p 1 0 0
chr5:1798723|1798902 hsa-miR-500a-3p 0 1 0
chr5:1798723|1798902 hsa-miR-1207-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1233-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4763-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6769b-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6812-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6816-5p 1 0 0
chr5:1798723|1798902 hsa-miR-3180 1 0 0
chr5:1798723|1798902 hsa-miR-6743-5p 1 1 0
chr5:1798723|1798902 hsa-miR-6756-5p 1 1 0
chr5:1798723|1798902 hsa-miR-6722-3p 1 1 0
chr5:1798723|1798902 hsa-miR-6879-5p 1 0 0
chr5:1798723|1798902 hsa-miR-7111-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6780b-5p 1 0 0
chr5:1798723|1798902 hsa-miR-10396b-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1237-5p 1 0 0
chr5:1798723|1798902 hsa-miR-1909-3p 1 1 0
chr5:1798723|1798902 hsa-miR-328-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4701-3p 1 0 0
chr5:1798723|1798902 hsa-miR-4725-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6794-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6846-5p 1 1 0
chr5:1798723|1798902 hsa-miR-4436b-3p 1 0 0
chr5:1798723|1798902 hsa-miR-6511b-5p 1 1 0
chr5:1798723|1798902 hsa-miR-10396a-3p 0 1 0
chr5:1798723|1798902 hsa-miR-10396b-3p 0 1 0
chr5:1798723|1798902 hsa-miR-6856-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6736-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4747-5p 1 0 0
chr5:1798723|1798902 hsa-miR-6785-5p 1 0 0
chr5:1798723|1798902 hsa-miR-4756-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:1798723|1798902
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MLYLSRHTVKPRALSTFLFGSIRGAAPVAVEPGAAVRSLLSPGLLPHLLPALGFKNKTV
Nucleotide Sequence CTGCTCTATCTCAGTCGTCACACGGTGAAGCCTCGAGCCCTCTCCACATTTCTATTTGGATCCATTCGAGGTGCAGCCCCCGTGGCTGTGGAACCCGGGGCAGCAGTGCGCTCACTTCTCTCACCCGGCCTCCTGCCCCATCTGCTGCCTGCGCTGGGGTTCAAAAACAAGACTGTC
CircID chr5:1798723|1798902
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MDPFEVQPPWLWNPGQQCAHFSHPASCPICCLRWGSKTRL
Nucleotide Sequence TTGGATCCATTCGAGGTGCAGCCCCCGTGGCTGTGGAACCCGGGGCAGCAGTGCGCTCACTTCTCTCACCCGGCCTCCTGCCCCATCTGCTGCCTGCGCTGGGGTTCAAAAACAAGACTG
CircID chr5:1798723|1798902
ORF Type ORF3
Protein Length 50
Nucleotide Length 153
Protein Sequence MFLNPSAGSRWGRRPGERSERTAAPGSTATGAAPRMDPNRNVERARGFTV
Nucleotide Sequence TTGTTTTTGAACCCCAGCGCAGGCAGCAGATGGGGCAGGAGGCCGGGTGAGAGAAGTGAGCGCACTGCTGCCCCGGGTTCCACAGCCACGGGGGCTGCACCTCGAATGGATCCAAATAGAAATGTGGAGAGGGCTCGAGGCTTCACCGTGTGA
CircID chr5:1798723|1798902
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MLPRVPQPRGLHLEWIQIEMWRGLEASPCDD
Nucleotide Sequence CTGCTGCCCCGGGTTCCACAGCCACGGGGGCTGCACCTCGAATGGATCCAAATAGAAATGTGGAGAGGGCTCGAGGCTTCACCGTGTGACGACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab