CircRNA Information

General Information
circRNA Basic Information
CircID chr5:180233709|180233910
Strand -
CircType exon
Host Gene ENSG00000050748.16;
Algorism CIRI2;
Sequence TTGTATTTATTACCAGGAGGAAATACCAGAGGAGTCACATTAGAAATCAACCAGACAGACTCGTACGTGGTTATCGCTACTTACACAGCATTAAATGCGGGTTGAAGCAGCACCCGCTCCGTGTTTCAGACACGGACTTGGGGTGGGCAAGGGGCCCTGTAAGAGGGCTTCCTCCTCTCAGTACTGGGGCTCTGCGTCTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:180233709|180233910 hsa-miR-187-5p 0 0 1
chr5:180233709|180233910 hsa-miR-187-3p 0 0 1
chr5:180233709|180233910 hsa-miR-134-5p 0 0 1
chr5:180233709|180233910 hsa-miR-134-3p 0 0 1
chr5:180233709|180233910 hsa-miR-155-5p 0 0 1
chr5:180233709|180233910 hsa-miR-155-3p 0 0 1
chr5:180233709|180233910 hsa-miR-494-5p 0 0 1
chr5:180233709|180233910 hsa-miR-494-3p 0 0 1
chr5:180233709|180233910 hsa-miR-562 0 0 1
chr5:180233709|180233910 hsa-miR-563 0 0 1
chr5:180233709|180233910 hsa-miR-600 0 0 1
chr5:180233709|180233910 hsa-miR-1231 0 0 1
chr5:180233709|180233910 hsa-miR-1238-5p 0 0 1
chr5:180233709|180233910 hsa-miR-1238-3p 0 0 1
chr5:180233709|180233910 hsa-miR-1278 0 0 1
chr5:180233709|180233910 hsa-miR-671-5p 0 1 1
chr5:180233709|180233910 hsa-miR-139-3p 1 0 1
chr5:180233709|180233910 hsa-miR-1225-3p 0 1 1
chr5:180233709|180233910 hsa-miR-296-5p 0 1 1
chr5:180233709|180233910 hsa-miR-770-5p 0 0 1
chr5:180233709|180233910 hsa-miR-576-5p 0 0 1
chr5:180233709|180233910 hsa-miR-886-3p 0 0 1
chr5:180233709|180233910 hsa-miR-326 1 0 0
chr5:180233709|180233910 hsa-miR-940 1 0 0
chr5:180233709|180233910 hsa-miR-3197 1 0 0
chr5:180233709|180233910 hsa-miR-3918 0 1 0
chr5:180233709|180233910 hsa-miR-4656 1 0 0
chr5:180233709|180233910 hsa-miR-4739 1 0 0
chr5:180233709|180233910 hsa-miR-8066 0 1 0
chr5:180233709|180233910 hsa-miR-6765-5p 1 0 0
chr5:180233709|180233910 hsa-miR-149-5p 1 0 0
chr5:180233709|180233910 hsa-miR-3691-3p 0 1 0
chr5:180233709|180233910 hsa-miR-4732-5p 1 0 0
chr5:180233709|180233910 hsa-miR-6780a-3p 0 1 0
chr5:180233709|180233910 hsa-miR-3158-5p 1 0 0
chr5:180233709|180233910 hsa-miR-7846-3p 1 0 0
chr5:180233709|180233910 hsa-miR-660-3p 0 1 0
chr5:180233709|180233910 hsa-miR-4687-5p 0 1 0
chr5:180233709|180233910 hsa-miR-4774-5p 0 1 0
chr5:180233709|180233910 hsa-miR-6818-5p 0 1 0
chr5:180233709|180233910 hsa-miR-6851-3p 0 1 0
chr5:180233709|180233910 hsa-miR-6852-3p 1 0 0
chr5:180233709|180233910 hsa-miR-6836-5p 1 1 0
chr5:180233709|180233910 hsa-miR-6831-5p 1 0 0
chr5:180233709|180233910 hsa-miR-6753-3p 1 0 0
chr5:180233709|180233910 hsa-miR-7107-3p 1 0 0
chr5:180233709|180233910 hsa-miR-6784-3p 0 1 0
chr5:180233709|180233910 hsa-miR-4723-3p 1 0 0
chr5:180233709|180233910 hsa-miR-483-3p 1 0 0
chr5:180233709|180233910 hsa-miR-6876-3p 1 0 0
chr5:180233709|180233910 hsa-miR-6824-3p 0 1 0
chr5:180233709|180233910 hsa-miR-6764-3p 0 1 0
chr5:180233709|180233910 hsa-miR-6820-3p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:180233709|180233910
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence LYLLPGGNTRGVTLEINQTDSYVVIATYTALNAG
Nucleotide Sequence TTGTATTTATTACCAGGAGGAAATACCAGAGGAGTCACATTAGAAATCAACCAGACAGACTCGTACGTGGTTATCGCTACTTACACAGCATTAAATGCGGGTTGA
CircID chr5:180233709|180233910
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MRVEAAPAPCFRHGLGVGKGPCKRASSSQYWGSASH
Nucleotide Sequence ATGCGGGTTGAAGCAGCACCCGCTCCGTGTTTCAGACACGGACTTGGGGTGGGCAAGGGGCCCTGTAAGAGGGCTTCCTCCTCTCAGTACTGGGGCTCTGCGTCTCAC
CircID chr5:180233709|180233910
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MKQHPLRVSDTDLGWARGPVRGLPPLSTGALRL
Nucleotide Sequence TTGAAGCAGCACCCGCTCCGTGTTTCAGACACGGACTTGGGGTGGGCAAGGGGCCCTGTAAGAGGGCTTCCTCCTCTCAGTACTGGGGCTCTGCGTCTC
CircID chr5:180233709|180233910
ORF Type ORF4
Protein Length 34
Nucleotide Length 105
Protein Sequence MRGGSPLTGPLAHPKSVSETRSGCCFNPHLMLCK
Nucleotide Sequence CTGAGAGGAGGAAGCCCTCTTACAGGGCCCCTTGCCCACCCCAAGTCCGTGTCTGAAACACGGAGCGGGTGCTGCTTCAACCCGCATTTAATGCTGTGTAAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab