CircRNA Information

General Information
circRNA Basic Information
CircID chr5:180602298|180602503
Strand +
CircType exon
Host Gene ENSG00000037280.14;
Algorism CIRI2;
Sequence AGAACTTCACAGACTGTTAGAGCTGCTGAGAAGAATTTGCTTTCCGAATTCAGCCTGGAAGGCGCCCAGGGACAGCTGTACTGAGTCTAGATGACTCTGACCCCCGCCCCAGGTCAAGGCCAGCAGAGCAGTCAGTGCCTCTGGAGAAGGCCCTTGCTCTCCCACCTGGCCCAGACTCCGAGGAGCCTGGGTCTGGAGCTGCCGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:180602298|180602503 hsa-miR-192-5p 0 0 1
chr5:180602298|180602503 hsa-miR-192-3p 0 0 1
chr5:180602298|180602503 hsa-miR-212-5p 0 0 1
chr5:180602298|180602503 hsa-miR-212-3p 0 0 1
chr5:180602298|180602503 hsa-miR-214-5p 0 0 1
chr5:180602298|180602503 hsa-miR-214-3p 0 0 1
chr5:180602298|180602503 hsa-miR-215-5p 0 0 1
chr5:180602298|180602503 hsa-miR-215-3p 0 0 1
chr5:180602298|180602503 hsa-miR-132-5p 0 0 1
chr5:180602298|180602503 hsa-miR-132-3p 0 0 1
chr5:180602298|180602503 hsa-miR-484 0 0 1
chr5:180602298|180602503 hsa-miR-612 0 0 1
chr5:180602298|180602503 hsa-miR-622 0 1 1
chr5:180602298|180602503 hsa-miR-631 0 0 1
chr5:180602298|180602503 hsa-miR-646 1 0 1
chr5:180602298|180602503 hsa-miR-766-5p 0 0 1
chr5:180602298|180602503 hsa-miR-766-3p 0 0 1
chr5:180602298|180602503 hsa-miR-922 0 0 1
chr5:180602298|180602503 hsa-miR-942-5p 0 0 1
chr5:180602298|180602503 hsa-miR-942-3p 0 0 1
chr5:180602298|180602503 hsa-miR-525-5p 0 1 1
chr5:180602298|180602503 hsa-miR-566 0 0 1
chr5:180602298|180602503 hsa-miR-520a-5p 0 1 1
chr5:180602298|180602503 hsa-miR-515-5p 0 0 1
chr5:180602298|180602503 hsa-miR-1285 0 0 1
chr5:180602298|180602503 hsa-miR-663 0 0 1
chr5:180602298|180602503 hsa-miR-326 0 1 0
chr5:180602298|180602503 hsa-miR-608 1 0 0
chr5:180602298|180602503 hsa-miR-762 1 0 0
chr5:180602298|180602503 hsa-miR-1248 0 1 0
chr5:180602298|180602503 hsa-miR-1256 0 1 0
chr5:180602298|180602503 hsa-miR-2861 1 0 0
chr5:180602298|180602503 hsa-miR-3141 1 0 0
chr5:180602298|180602503 hsa-miR-3176 0 1 0
chr5:180602298|180602503 hsa-miR-4297 0 1 0
chr5:180602298|180602503 hsa-miR-4269 0 1 0
chr5:180602298|180602503 hsa-miR-4292 0 1 0
chr5:180602298|180602503 hsa-miR-3661 1 1 0
chr5:180602298|180602503 hsa-miR-4651 1 0 0
chr5:180602298|180602503 hsa-miR-4660 0 1 0
chr5:180602298|180602503 hsa-miR-4686 0 1 0
chr5:180602298|180602503 hsa-miR-4706 1 0 0
chr5:180602298|180602503 hsa-miR-4741 1 0 0
chr5:180602298|180602503 hsa-miR-5698 1 0 0
chr5:180602298|180602503 hsa-miR-5787 1 0 0
chr5:180602298|180602503 hsa-miR-8078 0 1 0
chr5:180602298|180602503 hsa-miR-8089 1 0 0
chr5:180602298|180602503 hsa-miR-3194-3p 0 1 0
chr5:180602298|180602503 hsa-miR-3692-5p 0 1 0
chr5:180602298|180602503 hsa-miR-1301-3p 1 0 0
chr5:180602298|180602503 hsa-miR-6742-5p 1 0 0
chr5:180602298|180602503 hsa-miR-3180-3p 1 1 0
chr5:180602298|180602503 hsa-miR-6782-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6786-5p 1 0 0
chr5:180602298|180602503 hsa-miR-939-3p 0 1 0
chr5:180602298|180602503 hsa-miR-4640-5p 0 1 0
chr5:180602298|180602503 hsa-miR-1228-5p 1 0 0
chr5:180602298|180602503 hsa-miR-92b-5p 1 0 0
chr5:180602298|180602503 hsa-miR-4787-5p 1 1 0
chr5:180602298|180602503 hsa-miR-149-3p 1 0 0
chr5:180602298|180602503 hsa-miR-6801-5p 0 1 0
chr5:180602298|180602503 hsa-miR-4797-3p 0 1 0
chr5:180602298|180602503 hsa-miR-10400-5p 1 0 0
chr5:180602298|180602503 hsa-miR-1233-5p 1 1 0
chr5:180602298|180602503 hsa-miR-4763-3p 1 0 0
chr5:180602298|180602503 hsa-miR-6778-5p 0 1 0
chr5:180602298|180602503 hsa-miR-6787-5p 1 1 0
chr5:180602298|180602503 hsa-miR-6816-5p 1 1 0
chr5:180602298|180602503 hsa-miR-6865-5p 0 1 0
chr5:180602298|180602503 hsa-miR-1343-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6737-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6756-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6803-5p 1 0 0
chr5:180602298|180602503 hsa-miR-7107-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6722-3p 1 0 0
chr5:180602298|180602503 hsa-miR-6751-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6797-5p 1 0 0
chr5:180602298|180602503 hsa-miR-10396b-5p 1 1 0
chr5:180602298|180602503 hsa-miR-4649-5p 1 0 0
chr5:180602298|180602503 hsa-miR-6729-5p 1 0 0
chr5:180602298|180602503 hsa-miR-939-5p 1 0 0
chr5:180602298|180602503 hsa-miR-30c-1-3p 0 1 0
chr5:180602298|180602503 hsa-miR-6731-5p 1 1 0
chr5:180602298|180602503 hsa-miR-6791-5p 1 1 0
chr5:180602298|180602503 hsa-miR-6893-3p 0 1 0
chr5:180602298|180602503 hsa-miR-6805-3p 0 1 0
chr5:180602298|180602503 hsa-miR-5581-5p 0 1 0
chr5:180602298|180602503 hsa-miR-10397-5p 0 1 0
chr5:180602298|180602503 hsa-miR-4659b-3p 0 1 0
chr5:180602298|180602503 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:180602298|180602503
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MTLTPAPGQGQQSSQCLWRRPLLSHLAQTPRSLGLELP
Nucleotide Sequence ATGACTCTGACCCCCGCCCCAGGTCAAGGCCAGCAGAGCAGTCAGTGCCTCTGGAGAAGGCCCTTGCTCTCCCACCTGGCCCAGACTCCGAGGAGCCTGGGTCTGGAGCTGCCG
CircID chr5:180602298|180602503
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MLELLRRICFPNSAWKAPRDSCTESR
Nucleotide Sequence CTGTTAGAGCTGCTGAGAAGAATTTGCTTTCCGAATTCAGCCTGGAAGGCGCCCAGGGACAGCTGTACTGAGTCTAGATGA
CircID chr5:180602298|180602503
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MSLDDSDPRPRSRPAEQSVPLEKALALPPGPDSEEPGSGAAG
Nucleotide Sequence CTGAGTCTAGATGACTCTGACCCCCGCCCCAGGTCAAGGCCAGCAGAGCAGTCAGTGCCTCTGGAGAAGGCCCTTGCTCTCCCACCTGGCCCAGACTCCGAGGAGCCTGGGTCTGGAGCTGCCGGT
CircID chr5:180602298|180602503
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MGQVGEQGPSPEALTALLALTWGGGQSHLDSVQLSLGAFQAEFGKQILLSSSNSL
Nucleotide Sequence CTGGGCCAGGTGGGAGAGCAAGGGCCTTCTCCAGAGGCACTGACTGCTCTGCTGGCCTTGACCTGGGGCGGGGGTCAGAGTCATCTAGACTCAGTACAGCTGTCCCTGGGCGCCTTCCAGGCTGAATTCGGAAAGCAAATTCTTCTCAGCAGCTCTAACAGTCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab