CircRNA Information

General Information
circRNA Basic Information
CircID chr5:181237609|181237719
Strand -
CircType exon
Host Gene ENSG00000204628.10;
Algorism CIRI2;
Sequence CTGGCCATCAGCAGACCAGGCCAGGGAGGTGCACTGGGGTGGTTCTGCCTTGCTGCTGGTACTGATAACTTCTTGCTTCAGTTCATCTACAATGATCTTTCCCTCTAAATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:181237609|181237719 hsa-miR-15a-5p 0 0 1
chr5:181237609|181237719 hsa-miR-15a-3p 0 0 1
chr5:181237609|181237719 hsa-miR-148a-5p 0 0 1
chr5:181237609|181237719 hsa-miR-148a-3p 0 0 1
chr5:181237609|181237719 hsa-miR-15b-5p 0 0 1
chr5:181237609|181237719 hsa-miR-15b-3p 0 0 1
chr5:181237609|181237719 hsa-miR-152-5p 0 0 1
chr5:181237609|181237719 hsa-miR-152-3p 0 0 1
chr5:181237609|181237719 hsa-miR-195-5p 0 0 1
chr5:181237609|181237719 hsa-miR-195-3p 0 0 1
chr5:181237609|181237719 hsa-miR-148b-5p 0 0 1
chr5:181237609|181237719 hsa-miR-148b-3p 0 0 1
chr5:181237609|181237719 hsa-miR-424-5p 0 0 1
chr5:181237609|181237719 hsa-miR-424-3p 0 0 1
chr5:181237609|181237719 hsa-miR-497-5p 0 0 1
chr5:181237609|181237719 hsa-miR-497-3p 0 0 1
chr5:181237609|181237719 hsa-miR-634 0 0 1
chr5:181237609|181237719 hsa-miR-877-5p 0 0 1
chr5:181237609|181237719 hsa-miR-877-3p 0 0 1
chr5:181237609|181237719 hsa-miR-1303 0 0 1
chr5:181237609|181237719 hsa-miR-1825 0 1 1
chr5:181237609|181237719 hsa-miR-361-5p 0 0 1
chr5:181237609|181237719 hsa-miR-16 0 0 1
chr5:181237609|181237719 hsa-miR-940 1 0 0
chr5:181237609|181237719 hsa-miR-3176 0 1 0
chr5:181237609|181237719 hsa-miR-3714 1 1 0
chr5:181237609|181237719 hsa-miR-4530 0 1 0
chr5:181237609|181237719 hsa-miR-3974 0 1 0
chr5:181237609|181237719 hsa-miR-6071 0 1 0
chr5:181237609|181237719 hsa-miR-6127 1 0 0
chr5:181237609|181237719 hsa-miR-8075 0 1 0
chr5:181237609|181237719 hsa-miR-8085 1 0 0
chr5:181237609|181237719 hsa-miR-12115 1 0 0
chr5:181237609|181237719 hsa-miR-6734-5p 1 0 0
chr5:181237609|181237719 hsa-miR-212-5p 0 1 0
chr5:181237609|181237719 hsa-miR-6730-5p 1 0 0
chr5:181237609|181237719 hsa-miR-770-5p 1 1 0
chr5:181237609|181237719 hsa-miR-3663-5p 0 1 0
chr5:181237609|181237719 hsa-miR-6798-5p 1 0 0
chr5:181237609|181237719 hsa-miR-3126-5p 1 0 0
chr5:181237609|181237719 hsa-miR-7113-3p 0 1 0
chr5:181237609|181237719 hsa-miR-149-3p 1 0 0
chr5:181237609|181237719 hsa-miR-6776-3p 0 1 0
chr5:181237609|181237719 hsa-miR-6828-5p 1 0 0
chr5:181237609|181237719 hsa-miR-4708-3p 1 1 0
chr5:181237609|181237719 hsa-miR-423-5p 1 0 0
chr5:181237609|181237719 hsa-miR-584-3p 1 0 0
chr5:181237609|181237719 hsa-miR-624-5p 0 1 0
chr5:181237609|181237719 hsa-miR-1249-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6780a-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6797-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6780b-5p 1 0 0
chr5:181237609|181237719 hsa-miR-4725-3p 1 0 0
chr5:181237609|181237719 hsa-miR-6738-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6794-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6731-5p 1 0 0
chr5:181237609|181237719 hsa-miR-7843-5p 1 0 0
chr5:181237609|181237719 hsa-miR-4716-3p 1 0 0
chr5:181237609|181237719 hsa-miR-6750-5p 1 0 0
chr5:181237609|181237719 hsa-miR-6838-5p 1 1 0
chr5:181237609|181237719 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:181237609|181237719
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LAISRPGQGGALGWFCLAAGTDNFLLQFIYNDLSL
Nucleotide Sequence CTGGCCATCAGCAGACCAGGCCAGGGAGGTGCACTGGGGTGGTTCTGCCTTGCTGCTGGTACTGATAACTTCTTGCTTCAGTTCATCTACAATGATCTTTCCCTCTAA
CircID chr5:181237609|181237719
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MKQEVISTSSKAEPPQCTSLAWSADGQ
Nucleotide Sequence CTGAAGCAAGAAGTTATCAGTACCAGCAGCAAGGCAGAACCACCCCAGTGCACCTCCCTGGCCTGGTCTGCTGATGGCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab