CircRNA Information

General Information
circRNA Basic Information
CircID chr5:181247205|181247386
Strand +
CircType exon
Host Gene ENSG00000204628.10;
Algorism CIRI2;
Sequence CTTGTATGGAATGGAAGTGGTGCCTCTGGGGTCCCAGACACGGGAGAGAGGAAGCAGCCCAGGGGCTGGGAGAAGTGGTGAGACCCAGAAGAACGGTGGACCCAGTCAGGAAGGGTCCTGCCAGCAGGGCGTGGGCCAGCCTCGGGGTCTTCCCCAAAAGGCAGGTAGGGGCCTCCAGCAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:181247205|181247386 hsa-miR-197-5p 0 0 1
chr5:181247205|181247386 hsa-miR-197-3p 0 0 1
chr5:181247205|181247386 hsa-miR-187-5p 0 0 1
chr5:181247205|181247386 hsa-miR-187-3p 0 0 1
chr5:181247205|181247386 hsa-miR-150-5p 0 0 1
chr5:181247205|181247386 hsa-miR-150-3p 0 0 1
chr5:181247205|181247386 hsa-miR-370-5p 0 0 1
chr5:181247205|181247386 hsa-miR-370-3p 0 0 1
chr5:181247205|181247386 hsa-miR-381-5p 0 0 1
chr5:181247205|181247386 hsa-miR-381-3p 0 0 1
chr5:181247205|181247386 hsa-miR-587 0 0 1
chr5:181247205|181247386 hsa-miR-650 0 0 1
chr5:181247205|181247386 hsa-miR-300 0 0 1
chr5:181247205|181247386 hsa-miR-1229-5p 0 0 1
chr5:181247205|181247386 hsa-miR-1229-3p 0 0 1
chr5:181247205|181247386 hsa-miR-1231 0 0 1
chr5:181247205|181247386 hsa-miR-1200 1 0 1
chr5:181247205|181247386 hsa-miR-1286 0 0 1
chr5:181247205|181247386 hsa-miR-1287-5p 0 0 1
chr5:181247205|181247386 hsa-miR-1287-3p 0 0 1
chr5:181247205|181247386 hsa-miR-532-3p 1 0 1
chr5:181247205|181247386 hsa-miR-485-5p 0 1 1
chr5:181247205|181247386 hsa-miR-193a-5p 0 0 1
chr5:181247205|181247386 hsa-miR-331-3p 1 1 1
chr5:181247205|181247386 hsa-miR-1207-5p 0 0 1
chr5:181247205|181247386 hsa-miR-516a-3p 0 1 1
chr5:181247205|181247386 hsa-miR-220b 0 0 1
chr5:181247205|181247386 hsa-miR-7 0 0 1
chr5:181247205|181247386 hsa-miR-326 1 1 0
chr5:181247205|181247386 hsa-miR-637 1 0 0
chr5:181247205|181247386 hsa-miR-2110 0 1 0
chr5:181247205|181247386 hsa-miR-3183 0 1 0
chr5:181247205|181247386 hsa-miR-4326 1 0 0
chr5:181247205|181247386 hsa-miR-4449 1 0 0
chr5:181247205|181247386 hsa-miR-4656 1 0 0
chr5:181247205|181247386 hsa-miR-4741 1 0 0
chr5:181247205|181247386 hsa-miR-5787 1 0 0
chr5:181247205|181247386 hsa-miR-1843 0 1 0
chr5:181247205|181247386 hsa-miR-4731-5p 1 0 0
chr5:181247205|181247386 hsa-miR-671-5p 1 0 0
chr5:181247205|181247386 hsa-miR-3150a-3p 1 1 0
chr5:181247205|181247386 hsa-miR-6861-5p 1 0 0
chr5:181247205|181247386 hsa-miR-3692-5p 0 1 0
chr5:181247205|181247386 hsa-miR-6089 1 0 0
chr5:181247205|181247386 hsa-miR-1225-3p 1 0 0
chr5:181247205|181247386 hsa-miR-4722-5p 1 0 0
chr5:181247205|181247386 hsa-miR-6875-3p 1 1 0
chr5:181247205|181247386 hsa-miR-6762-3p 1 1 0
chr5:181247205|181247386 hsa-miR-4677-5p 1 0 0
chr5:181247205|181247386 hsa-miR-7110-3p 0 1 0
chr5:181247205|181247386 hsa-miR-185-3p 1 1 0
chr5:181247205|181247386 hsa-miR-6788-3p 1 1 0
chr5:181247205|181247386 hsa-miR-4713-5p 0 1 0
chr5:181247205|181247386 hsa-miR-4436b-5p 1 1 0
chr5:181247205|181247386 hsa-miR-939-3p 1 1 0
chr5:181247205|181247386 hsa-miR-5010-3p 1 0 0
chr5:181247205|181247386 hsa-miR-7113-3p 1 0 0
chr5:181247205|181247386 hsa-miR-3667-3p 0 1 0
chr5:181247205|181247386 hsa-miR-7111-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6739-3p 1 0 0
chr5:181247205|181247386 hsa-miR-378a-5p 1 1 0
chr5:181247205|181247386 hsa-miR-6742-3p 1 1 0
chr5:181247205|181247386 hsa-miR-6769a-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6743-3p 1 0 0
chr5:181247205|181247386 hsa-miR-508-5p 0 1 0
chr5:181247205|181247386 hsa-miR-532-5p 0 1 0
chr5:181247205|181247386 hsa-miR-6868-5p 0 1 0
chr5:181247205|181247386 hsa-miR-5088-3p 1 0 0
chr5:181247205|181247386 hsa-miR-3124-3p 1 0 0
chr5:181247205|181247386 hsa-miR-520g-5p 0 1 0
chr5:181247205|181247386 hsa-miR-1255b-2-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6734-3p 1 0 0
chr5:181247205|181247386 hsa-miR-1233-5p 1 0 0
chr5:181247205|181247386 hsa-miR-5001-5p 1 0 0
chr5:181247205|181247386 hsa-miR-6774-5p 1 0 0
chr5:181247205|181247386 hsa-miR-6780b-5p 0 1 0
chr5:181247205|181247386 hsa-miR-4725-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6799-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6791-5p 1 0 0
chr5:181247205|181247386 hsa-miR-6893-3p 0 1 0
chr5:181247205|181247386 hsa-miR-9851-5p 0 1 0
chr5:181247205|181247386 hsa-miR-6511a-3p 0 1 0
chr5:181247205|181247386 hsa-miR-6784-3p 1 0 0
chr5:181247205|181247386 hsa-miR-6862-3p 1 0 0
chr5:181247205|181247386 hsa-miR-6810-3p 1 0 0
chr5:181247205|181247386 hsa-miR-10392-3p 1 0 0
chr5:181247205|181247386 hsa-miR-3059-5p 1 1 0
chr5:181247205|181247386 hsa-miR-6511b-3p 1 1 0
chr5:181247205|181247386 hsa-miR-6819-3p 1 0 0
chr5:181247205|181247386 hsa-miR-330-5p 1 0 0
chr5:181247205|181247386 hsa-miR-6783-3p 1 1 0
chr5:181247205|181247386 hsa-miR-4690-3p 1 0 0
chr5:181247205|181247386 hsa-miR-7162-5p 0 1 0
chr5:181247205|181247386 hsa-miR-516b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:181247205|181247386
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence LYGMEVVPLGSQTRERGSSPGAGRSGETQKNGGPSQEGSCQQGVGQPRGLPQKAGRGLQQ
Nucleotide Sequence TTGTATGGAATGGAAGTGGTGCCTCTGGGGTCCCAGACACGGGAGAGAGGAAGCAGCCCAGGGGCTGGGAGAAGTGGTGAGACCCAGAAGAACGGTGGACCCAGTCAGGAAGGGTCCTGCCAGCAGGGCGTGGGCCAGCCTCGGGGTCTTCCCCAAAAGGCAGGTAGGGGCCTCCAGCAA
CircID chr5:181247205|181247386
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MEWKWCLWGPRHGREEAAQGLGEVVRPRRTVDPVRKGPASRAWASLGVFPKRQVGASSK
Nucleotide Sequence ATGGAATGGAAGTGGTGCCTCTGGGGTCCCAGACACGGGAGAGAGGAAGCAGCCCAGGGGCTGGGAGAAGTGGTGAGACCCAGAAGAACGGTGGACCCAGTCAGGAAGGGTCCTGCCAGCAGGGCGTGGGCCAGCCTCGGGGTCTTCCCCAAAAGGCAGGTAGGGGCCTCCAGCAAG
CircID chr5:181247205|181247386
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MPFGEDPEAGPRPAGRTLPDWVHRSSGSHHFSQPLGCFLSPVSGTPEAPLPFHT
Nucleotide Sequence CTGCCTTTTGGGGAAGACCCCGAGGCTGGCCCACGCCCTGCTGGCAGGACCCTTCCTGACTGGGTCCACCGTTCTTCTGGGTCTCACCACTTCTCCCAGCCCCTGGGCTGCTTCCTCTCTCCCGTGTCTGGGACCCCAGAGGCACCACTTCCATTCCATACA
CircID chr5:181247205|181247386
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence LLEAPTCLLGKTPRLAHALLAGPFLTGSTVLLGLTTSPSPWAASSLPCLGPQRHHFHSIQ
Nucleotide Sequence TTGCTGGAGGCCCCTACCTGCCTTTTGGGGAAGACCCCGAGGCTGGCCCACGCCCTGCTGGCAGGACCCTTCCTGACTGGGTCCACCGTTCTTCTGGGTCTCACCACTTCTCCCAGCCCCTGGGCTGCTTCCTCTCTCCCGTGTCTGGGACCCCAGAGGCACCACTTCCATTCCATACAA
CircID chr5:181247205|181247386
ORF Type ORF5
Protein Length 35
Nucleotide Length 105
Protein Sequence MGPPFFWVSPLLPAPGLLPLSRVWDPRGTTSIPYK
Nucleotide Sequence CTGGGTCCACCGTTCTTCTGGGTCTCACCACTTCTCCCAGCCCCTGGGCTGCTTCCTCTCTCCCGTGTCTGGGACCCCAGAGGCACCACTTCCATTCCATACAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab