CircRNA Information

General Information
circRNA Basic Information
CircID chr5:34657718|34658030
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence TGGCTAAAATATAAGAACTGGATCAATCTCCTCACATAAAATCAACTGTCTTACAAACCCAAGGGGGAAAAAAATCACACTTGTTAGGCATCATTAAGAAAAGATTATCAGATTATATACATCAGTAATAAAATTCCGAGCCACAGGGCGAACAGGGACCTGCAGGCTGGGGACAGAGCAGCCAAAATCCAGCCTCCCTGTGATTCCCGACCTCTTCTCCAACTCTGTGCAAAGCCCGAGGAGGTGAGACTCTCTTCGCTAAGGCGAGCTTCGGCTATGTCCTAGTGATGGACAGTTCCTCTCTGCCAGGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:34657718|34658030 hsa-miR-410-5p 0 0 1
chr5:34657718|34658030 hsa-miR-410-3p 0 0 1
chr5:34657718|34658030 hsa-miR-507 0 1 1
chr5:34657718|34658030 hsa-miR-557 0 1 1
chr5:34657718|34658030 hsa-miR-571 0 0 1
chr5:34657718|34658030 hsa-miR-595 0 0 1
chr5:34657718|34658030 hsa-miR-596 0 1 1
chr5:34657718|34658030 hsa-miR-604 0 0 1
chr5:34657718|34658030 hsa-miR-620 0 0 1
chr5:34657718|34658030 hsa-miR-629-5p 0 0 1
chr5:34657718|34658030 hsa-miR-629-3p 0 0 1
chr5:34657718|34658030 hsa-miR-640 0 0 1
chr5:34657718|34658030 hsa-miR-641 0 0 1
chr5:34657718|34658030 hsa-miR-647 0 1 1
chr5:34657718|34658030 hsa-miR-657 0 0 1
chr5:34657718|34658030 hsa-miR-1229-5p 0 0 1
chr5:34657718|34658030 hsa-miR-1229-3p 0 0 1
chr5:34657718|34658030 hsa-miR-1205 0 1 1
chr5:34657718|34658030 hsa-miR-1287-5p 0 0 1
chr5:34657718|34658030 hsa-miR-1287-3p 0 0 1
chr5:34657718|34658030 hsa-miR-1290 0 0 1
chr5:34657718|34658030 hsa-miR-1294 0 0 1
chr5:34657718|34658030 hsa-miR-1249-5p 0 0 1
chr5:34657718|34658030 hsa-miR-1249-3p 0 0 1
chr5:34657718|34658030 hsa-miR-1253 0 0 1
chr5:34657718|34658030 hsa-miR-1270 0 0 1
chr5:34657718|34658030 hsa-miR-1321 0 1 1
chr5:34657718|34658030 hsa-miR-1322 0 0 1
chr5:34657718|34658030 hsa-miR-1197 0 0 1
chr5:34657718|34658030 hsa-miR-145-5p 0 0 1
chr5:34657718|34658030 hsa-miR-485-5p 0 0 1
chr5:34657718|34658030 hsa-miR-146b-3p 0 1 1
chr5:34657718|34658030 hsa-miR-339-5p 0 0 1
chr5:34657718|34658030 hsa-miR-513a-5p 1 1 1
chr5:34657718|34658030 hsa-miR-34c-3p 0 0 1
chr5:34657718|34658030 hsa-miR-876-5p 0 0 1
chr5:34657718|34658030 hsa-miR-590-3p 0 0 1
chr5:34657718|34658030 hsa-miR-556-3p 0 0 1
chr5:34657718|34658030 hsa-miR-1274a 0 0 1
chr5:34657718|34658030 hsa-miR-1274b 0 0 1
chr5:34657718|34658030 hsa-miR-220c 0 0 1
chr5:34657718|34658030 hsa-miR-198 1 0 0
chr5:34657718|34658030 hsa-miR-2861 0 1 0
chr5:34657718|34658030 hsa-miR-3171 0 1 0
chr5:34657718|34658030 hsa-miR-4259 1 0 0
chr5:34657718|34658030 hsa-miR-4270 0 1 0
chr5:34657718|34658030 hsa-miR-4420 1 0 0
chr5:34657718|34658030 hsa-miR-4441 0 1 0
chr5:34657718|34658030 hsa-miR-4516 1 1 0
chr5:34657718|34658030 hsa-miR-4739 1 0 0
chr5:34657718|34658030 hsa-miR-4784 0 1 0
chr5:34657718|34658030 hsa-miR-5703 0 1 0
chr5:34657718|34658030 hsa-miR-6086 1 1 0
chr5:34657718|34658030 hsa-miR-8073 1 1 0
chr5:34657718|34658030 hsa-miR-7106-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6825-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6857-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6799-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6089 1 0 0
chr5:34657718|34658030 hsa-miR-6744-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6762-3p 1 1 0
chr5:34657718|34658030 hsa-miR-6849-3p 0 1 0
chr5:34657718|34658030 hsa-miR-6726-3p 0 1 0
chr5:34657718|34658030 hsa-miR-6782-5p 1 0 0
chr5:34657718|34658030 hsa-miR-3150b-3p 0 1 0
chr5:34657718|34658030 hsa-miR-296-3p 1 0 0
chr5:34657718|34658030 hsa-miR-6771-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6823-5p 1 1 0
chr5:34657718|34658030 hsa-miR-1266-3p 0 1 0
chr5:34657718|34658030 hsa-miR-3162-5p 1 0 0
chr5:34657718|34658030 hsa-miR-3189-3p 0 1 0
chr5:34657718|34658030 hsa-miR-4750-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6513-3p 0 1 0
chr5:34657718|34658030 hsa-miR-3912-5p 0 1 0
chr5:34657718|34658030 hsa-miR-99a-3p 0 1 0
chr5:34657718|34658030 hsa-miR-1207-5p 1 1 0
chr5:34657718|34658030 hsa-miR-6816-5p 1 0 0
chr5:34657718|34658030 hsa-miR-5001-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6726-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6754-5p 1 1 0
chr5:34657718|34658030 hsa-miR-6756-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6813-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6842-5p 1 0 0
chr5:34657718|34658030 hsa-miR-7107-5p 0 1 0
chr5:34657718|34658030 hsa-miR-6763-5p 1 0 0
chr5:34657718|34658030 hsa-miR-3620-5p 1 0 0
chr5:34657718|34658030 hsa-miR-328-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6846-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6848-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6889-5p 1 0 0
chr5:34657718|34658030 hsa-miR-939-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6856-5p 0 1 0
chr5:34657718|34658030 hsa-miR-6785-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6805-3p 0 1 0
chr5:34657718|34658030 hsa-miR-3085-3p 0 1 0
chr5:34657718|34658030 hsa-miR-4756-5p 1 0 0
chr5:34657718|34658030 hsa-miR-6859-5p 0 1 0
chr5:34657718|34658030 hsa-miR-10394-5p 1 1 0
chr5:34657718|34658030 hsa-miR-99b-3p 0 1 0
chr5:34657718|34658030 hsa-miR-550a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:34657718|34658030
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MQAGDRAAKIQPPCDSRPLLQLCAKPEEVRLSSLRRASAMS
Nucleotide Sequence CTGCAGGCTGGGGACAGAGCAGCCAAAATCCAGCCTCCCTGTGATTCCCGACCTCTTCTCCAACTCTGTGCAAAGCCCGAGGAGGTGAGACTCTCTTCGCTAAGGCGAGCTTCGGCTATGTCCTAG
CircID chr5:34657718|34658030
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MGTEQPKSSLPVIPDLFSNSVQSPRR
Nucleotide Sequence CTGGGGACAGAGCAGCCAAAATCCAGCCTCCCTGTGATTCCCGACCTCTTCTCCAACTCTGTGCAAAGCCCGAGGAGGTGA
CircID chr5:34657718|34658030
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MDQSPHIKSTVLQTQGGKKSHLLGIIKKRLSDYIHQ
Nucleotide Sequence CTGGATCAATCTCCTCACATAAAATCAACTGTCTTACAAACCCAAGGGGGAAAAAAATCACACTTGTTAGGCATCATTAAGAAAAGATTATCAGATTATATACATCAGTAA
CircID chr5:34657718|34658030
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MCKARGGETLFAKASFGYVLVMDSSSLPG
Nucleotide Sequence CTGTGCAAAGCCCGAGGAGGTGAGACTCTCTTCGCTAAGGCGAGCTTCGGCTATGTCCTAGTGATGGACAGTTCCTCTCTGCCAGGC
CircID chr5:34657718|34658030
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MHRVGEEVGNHREAGFWLLCPQPAGPCSPCGSEFYY
Nucleotide Sequence TTGCACAGAGTTGGAGAAGAGGTCGGGAATCACAGGGAGGCTGGATTTTGGCTGCTCTGTCCCCAGCCTGCAGGTCCCTGTTCGCCCTGTGGCTCGGAATTTTATTACTGA
CircID chr5:34657718|34658030
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MEKRSGITGRLDFGCSVPSLQVPVRPVARNFITDVYNLIIFS
Nucleotide Sequence TTGGAGAAGAGGTCGGGAATCACAGGGAGGCTGGATTTTGGCTGCTCTGTCCCCAGCCTGCAGGTCCCTGTTCGCCCTGTGGCTCGGAATTTTATTACTGATGTATATAATCTGATAATCTTTTCTTAA
CircID chr5:34657718|34658030
ORF Type ORF7
Protein Length 25
Nucleotide Length 78
Protein Sequence MAALSPACRSLFALWLGILLLMYII
Nucleotide Sequence TTGGCTGCTCTGTCCCCAGCCTGCAGGTCCCTGTTCGCCCTGTGGCTCGGAATTTTATTACTGATGTATATAATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab