CircRNA Information

General Information
circRNA Basic Information
CircID chr5:34968563|34968722
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGGAGATCAATCTGCCTTGCTTGCCACCCACCAGCGCCCATGCACACCTTCCAGGGGCCTACAGACCAGCTCCTCCTGCTCACTGCCACCACCTGTACCTACTGTCTGGAGGCCTGAGGATAGTCCTACCCTACCCACCGCCACCAGCACATGCATGCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:34968563|34968722 hsa-miR-31-5p 0 0 1
chr5:34968563|34968722 hsa-miR-31-3p 0 0 1
chr5:34968563|34968722 hsa-miR-34a-5p 0 0 1
chr5:34968563|34968722 hsa-miR-34a-3p 0 0 1
chr5:34968563|34968722 hsa-miR-449a 1 0 1
chr5:34968563|34968722 hsa-miR-552-5p 0 0 1
chr5:34968563|34968722 hsa-miR-552-3p 0 0 1
chr5:34968563|34968722 hsa-miR-449b-5p 0 0 1
chr5:34968563|34968722 hsa-miR-449b-3p 0 0 1
chr5:34968563|34968722 hsa-miR-766-5p 0 0 1
chr5:34968563|34968722 hsa-miR-766-3p 0 0 1
chr5:34968563|34968722 hsa-miR-765 0 0 1
chr5:34968563|34968722 hsa-miR-541-5p 0 0 1
chr5:34968563|34968722 hsa-miR-541-3p 0 0 1
chr5:34968563|34968722 hsa-miR-708-5p 0 0 1
chr5:34968563|34968722 hsa-miR-708-3p 0 0 1
chr5:34968563|34968722 hsa-miR-1293 0 0 1
chr5:34968563|34968722 hsa-miR-1324 0 0 1
chr5:34968563|34968722 hsa-miR-654-5p 0 0 1
chr5:34968563|34968722 hsa-miR-28-5p 0 0 1
chr5:34968563|34968722 hsa-miR-331-3p 0 0 1
chr5:34968563|34968722 hsa-miR-34c-5p 1 0 1
chr5:34968563|34968722 hsa-miR-138 0 0 1
chr5:34968563|34968722 hsa-miR-601 1 0 0
chr5:34968563|34968722 hsa-miR-608 1 0 0
chr5:34968563|34968722 hsa-miR-612 1 0 0
chr5:34968563|34968722 hsa-miR-648 1 0 0
chr5:34968563|34968722 hsa-miR-658 1 0 0
chr5:34968563|34968722 hsa-miR-665 1 0 0
chr5:34968563|34968722 hsa-miR-1183 1 1 0
chr5:34968563|34968722 hsa-miR-1268a 1 0 0
chr5:34968563|34968722 hsa-miR-548q 1 0 0
chr5:34968563|34968722 hsa-miR-3132 1 0 0
chr5:34968563|34968722 hsa-miR-3665 1 0 0
chr5:34968563|34968722 hsa-miR-1268b 1 0 0
chr5:34968563|34968722 hsa-miR-4467 1 0 0
chr5:34968563|34968722 hsa-miR-3689c 1 0 0
chr5:34968563|34968722 hsa-miR-4487 0 1 0
chr5:34968563|34968722 hsa-miR-4507 1 0 0
chr5:34968563|34968722 hsa-miR-1587 1 0 0
chr5:34968563|34968722 hsa-miR-4651 1 0 0
chr5:34968563|34968722 hsa-miR-4673 1 0 0
chr5:34968563|34968722 hsa-miR-4688 1 0 0
chr5:34968563|34968722 hsa-miR-4739 1 0 0
chr5:34968563|34968722 hsa-miR-4767 1 0 0
chr5:34968563|34968722 hsa-miR-6165 0 1 0
chr5:34968563|34968722 hsa-miR-6745 1 0 0
chr5:34968563|34968722 hsa-miR-8072 1 0 0
chr5:34968563|34968722 hsa-miR-8075 1 0 0
chr5:34968563|34968722 hsa-miR-12114 1 0 0
chr5:34968563|34968722 hsa-miR-138-5p 1 1 0
chr5:34968563|34968722 hsa-miR-150-3p 1 0 0
chr5:34968563|34968722 hsa-miR-504-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6861-5p 1 0 0
chr5:34968563|34968722 hsa-miR-125a-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6799-5p 1 1 0
chr5:34968563|34968722 hsa-miR-3934-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6880-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4722-5p 1 1 0
chr5:34968563|34968722 hsa-miR-6741-5p 1 1 0
chr5:34968563|34968722 hsa-miR-3622b-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6759-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6721-5p 1 0 0
chr5:34968563|34968722 hsa-miR-197-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6776-5p 1 0 0
chr5:34968563|34968722 hsa-miR-7845-5p 1 0 0
chr5:34968563|34968722 hsa-miR-3663-5p 0 1 0
chr5:34968563|34968722 hsa-miR-6748-5p 1 1 0
chr5:34968563|34968722 hsa-miR-6793-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6732-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6782-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6821-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6786-5p 1 1 0
chr5:34968563|34968722 hsa-miR-1229-5p 1 1 0
chr5:34968563|34968722 hsa-miR-1228-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6771-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4690-5p 1 0 0
chr5:34968563|34968722 hsa-miR-92b-5p 1 0 0
chr5:34968563|34968722 hsa-miR-3677-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6749-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6789-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6802-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6781-5p 1 0 0
chr5:34968563|34968722 hsa-miR-7112-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4708-3p 0 1 0
chr5:34968563|34968722 hsa-miR-1225-5p 1 0 0
chr5:34968563|34968722 hsa-miR-1250-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4746-3p 1 0 0
chr5:34968563|34968722 hsa-miR-4761-5p 0 1 0
chr5:34968563|34968722 hsa-miR-6792-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4645-3p 0 1 0
chr5:34968563|34968722 hsa-miR-10400-5p 1 0 0
chr5:34968563|34968722 hsa-miR-1207-5p 1 0 0
chr5:34968563|34968722 hsa-miR-1233-5p 1 0 0
chr5:34968563|34968722 hsa-miR-3689b-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6769b-5p 1 1 0
chr5:34968563|34968722 hsa-miR-6778-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6865-5p 1 0 0
chr5:34968563|34968722 hsa-miR-1343-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6726-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6743-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6756-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6769a-5p 1 1 0
chr5:34968563|34968722 hsa-miR-6803-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6815-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6842-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6851-5p 1 0 0
chr5:34968563|34968722 hsa-miR-11181-3p 0 1 0
chr5:34968563|34968722 hsa-miR-1249-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6722-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6751-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6779-5p 1 0 0
chr5:34968563|34968722 hsa-miR-3620-5p 1 0 0
chr5:34968563|34968722 hsa-miR-1237-5p 1 0 0
chr5:34968563|34968722 hsa-miR-328-5p 1 0 0
chr5:34968563|34968722 hsa-miR-3689a-3p 1 0 0
chr5:34968563|34968722 hsa-miR-449c-5p 1 0 0
chr5:34968563|34968722 hsa-miR-4701-3p 1 0 0
chr5:34968563|34968722 hsa-miR-6846-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6848-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6883-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6831-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6885-5p 1 0 0
chr5:34968563|34968722 hsa-miR-939-5p 1 1 0
chr5:34968563|34968722 hsa-miR-4758-5p 1 0 0
chr5:34968563|34968722 hsa-miR-10394-3p 1 0 0
chr5:34968563|34968722 hsa-miR-3940-5p 1 0 0
chr5:34968563|34968722 hsa-miR-7151-3p 1 0 0
chr5:34968563|34968722 hsa-miR-4747-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6766-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6724-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6791-5p 1 0 0
chr5:34968563|34968722 hsa-miR-6753-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:34968563|34968722
ORF Type ORF1
Protein Length 53
Nucleotide Length 159
Protein Sequence LEINLPCLPPTSAHAHLPGAYRPAPPAHCHHLYLLSGGLRIVLPYPPPPAHAC
Nucleotide Sequence CTGGAGATCAATCTGCCTTGCTTGCCACCCACCAGCGCCCATGCACACCTTCCAGGGGCCTACAGACCAGCTCCTCCTGCTCACTGCCACCACCTGTACCTACTGTCTGGAGGCCTGAGGATAGTCCTACCCTACCCACCGCCACCAGCACATGCATGC
CircID chr5:34968563|34968722
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MHTFQGPTDQLLLLTATTCTYCLEA
Nucleotide Sequence ATGCACACCTTCCAGGGGCCTACAGACCAGCTCCTCCTGCTCACTGCCACCACCTGTACCTACTGTCTGGAGGCCTGA
CircID chr5:34968563|34968722
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MLATHQRPCTPSRGLQTSSSCSLPPPVPTVWRPEDSPTLPTATSTCM
Nucleotide Sequence TTGCTTGCCACCCACCAGCGCCCATGCACACCTTCCAGGGGCCTACAGACCAGCTCCTCCTGCTCACTGCCACCACCTGTACCTACTGTCTGGAGGCCTGAGGATAGTCCTACCCTACCCACCGCCACCAGCACATGCATG
CircID chr5:34968563|34968722
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MHVLVAVGRVGLSSGLQTVGTGGGSEQEELVCRPLEGVHGRWWVASKAD
Nucleotide Sequence ATGCATGTGCTGGTGGCGGTGGGTAGGGTAGGACTATCCTCAGGCCTCCAGACAGTAGGTACAGGTGGTGGCAGTGAGCAGGAGGAGCTGGTCTGTAGGCCCCTGGAAGGTGTGCATGGGCGCTGGTGGGTGGCAAGCAAGGCAGATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab