CircRNA Information

General Information
circRNA Basic Information
CircID chr5:37020544|37020877
Strand +
CircType exon
Host Gene ENSG00000164190.15;
Algorism CIRI2;
Sequence CTGTGTCAAATAAATATCAAAGCTCTGGGCAAACGGCCTCATGGAGGCCAAGTATCGAACAATCAAGCAAGCATCATCATAGTCCACAGTATCAGAGTTCATCCTGCAACAAAAAGTCATTAAAAATTTATTTTTCTTTTTTTGTAACTTAGGGAAATAGATATCAAGGAGATAAATGTAAACTGTTTTCTCCTTGGATCTTACTTTAATGTGCTAAACTGAGAAGGTGTGGTTTTGATAATGCTTCTAAGAAACTTTTTTCGGTTTTCAGCTCGATGCATAATTTGGCCAGTTGTCTCAATTTCCTTTGCATGATGTGTTCCTTCAGATGATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:37020544|37020877 hsa-miR-375-5p 0 0 1
chr5:37020544|37020877 hsa-miR-375-3p 0 0 1
chr5:37020544|37020877 hsa-miR-193b-5p 0 0 1
chr5:37020544|37020877 hsa-miR-193b-3p 0 0 1
chr5:37020544|37020877 hsa-miR-527 0 0 1
chr5:37020544|37020877 hsa-miR-559 0 0 1
chr5:37020544|37020877 hsa-miR-561-5p 0 0 1
chr5:37020544|37020877 hsa-miR-561-3p 0 0 1
chr5:37020544|37020877 hsa-miR-570-5p 0 0 1
chr5:37020544|37020877 hsa-miR-570-3p 0 0 1
chr5:37020544|37020877 hsa-miR-586 0 0 1
chr5:37020544|37020877 hsa-miR-1323 0 0 1
chr5:37020544|37020877 hsa-miR-892a 0 0 1
chr5:37020544|37020877 hsa-miR-890 0 0 1
chr5:37020544|37020877 hsa-miR-1228-5p 0 0 1
chr5:37020544|37020877 hsa-miR-1228-3p 0 0 1
chr5:37020544|37020877 hsa-miR-548j-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548j-3p 0 0 1
chr5:37020544|37020877 hsa-miR-1286 0 0 1
chr5:37020544|37020877 hsa-miR-548k 0 0 1
chr5:37020544|37020877 hsa-miR-548l 0 0 1
chr5:37020544|37020877 hsa-miR-548o-3p 0 0 1
chr5:37020544|37020877 hsa-miR-1272 0 0 1
chr5:37020544|37020877 hsa-miR-1282 0 0 1
chr5:37020544|37020877 hsa-miR-1252-5p 0 0 1
chr5:37020544|37020877 hsa-miR-1252-3p 0 0 1
chr5:37020544|37020877 hsa-miR-1322 1 0 1
chr5:37020544|37020877 hsa-miR-548o 0 0 1
chr5:37020544|37020877 hsa-miR-524-5p 0 0 1
chr5:37020544|37020877 hsa-miR-513a-3p 0 0 1
chr5:37020544|37020877 hsa-miR-548b-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548d-5p 0 0 1
chr5:37020544|37020877 hsa-miR-518a-5p 0 0 1
chr5:37020544|37020877 hsa-miR-193a-3p 0 0 1
chr5:37020544|37020877 hsa-miR-491-3p 0 0 1
chr5:37020544|37020877 hsa-miR-508-3p 0 0 1
chr5:37020544|37020877 hsa-miR-520d-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548c-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548a-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548i 0 0 1
chr5:37020544|37020877 hsa-miR-514 0 0 1
chr5:37020544|37020877 hsa-miR-549 0 0 1
chr5:37020544|37020877 hsa-miR-219-5p 0 0 1
chr5:37020544|37020877 hsa-miR-548h 0 0 1
chr5:37020544|37020877 hsa-miR-636 1 0 0
chr5:37020544|37020877 hsa-miR-3169 1 0 0
chr5:37020544|37020877 hsa-miR-4491 1 0 0
chr5:37020544|37020877 hsa-miR-4518 1 0 0
chr5:37020544|37020877 hsa-miR-4647 1 0 0
chr5:37020544|37020877 hsa-miR-4734 1 0 0
chr5:37020544|37020877 hsa-miR-4752 1 0 0
chr5:37020544|37020877 hsa-miR-5093 1 0 0
chr5:37020544|37020877 hsa-miR-8056 1 0 0
chr5:37020544|37020877 hsa-miR-12119 1 0 0
chr5:37020544|37020877 hsa-miR-12120 1 0 0
chr5:37020544|37020877 hsa-miR-4435 1 0 0
chr5:37020544|37020877 hsa-miR-122-5p 1 0 0
chr5:37020544|37020877 hsa-miR-8071 1 0 0
chr5:37020544|37020877 hsa-miR-7114-5p 1 0 0
chr5:37020544|37020877 hsa-miR-6873-5p 1 0 0
chr5:37020544|37020877 hsa-miR-8069 1 0 0
chr5:37020544|37020877 hsa-miR-6716-5p 1 0 0
chr5:37020544|37020877 hsa-miR-6796-5p 1 0 0
chr5:37020544|37020877 hsa-miR-1226-5p 1 0 0
chr5:37020544|37020877 hsa-miR-6864-5p 1 0 0
chr5:37020544|37020877 hsa-miR-4524a-3p 1 0 0
chr5:37020544|37020877 hsa-miR-1915-3p 1 0 0
chr5:37020544|37020877 hsa-miR-4685-5p 1 0 0
chr5:37020544|37020877 hsa-miR-6859-5p 1 0 0
chr5:37020544|37020877 hsa-miR-642a-3p 1 0 0
chr5:37020544|37020877 hsa-miR-1912-3p 1 0 0
chr5:37020544|37020877 hsa-miR-10525-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:37020544|37020877
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence LCQINIKALGKRPHGGQVSNNQASIIIVHSIRVHPATKSH
Nucleotide Sequence CTGTGTCAAATAAATATCAAAGCTCTGGGCAAACGGCCTCATGGAGGCCAAGTATCGAACAATCAAGCAAGCATCATCATAGTCCACAGTATCAGAGTTCATCCTGCAACAAAAAGTCATTAA
CircID chr5:37020544|37020877
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MIMLLRNFFRFSARCIIWPVVSISFA
Nucleotide Sequence TTGATAATGCTTCTAAGAAACTTTTTTCGGTTTTCAGCTCGATGCATAATTTGGCCAGTTGTCTCAATTTCCTTTGCATGA
CircID chr5:37020544|37020877
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MRRCGFDNASKKLFSVFSSMHNLASCLNFLCMMCSFR
Nucleotide Sequence CTGAGAAGGTGTGGTTTTGATAATGCTTCTAAGAAACTTTTTTCGGTTTTCAGCTCGATGCATAATTTGGCCAGTTGTCTCAATTTCCTTTGCATGATGTGTTCCTTCAGATGA
CircID chr5:37020544|37020877
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MKEHIMQRKLRQLAKLCIELKTEKSFLEALSKPHLLSLAH
Nucleotide Sequence CTGAAGGAACACATCATGCAAAGGAAATTGAGACAACTGGCCAAATTATGCATCGAGCTGAAAACCGAAAAAAGTTTCTTAGAAGCATTATCAAAACCACACCTTCTCAGTTTAGCACATTAA
CircID chr5:37020544|37020877
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MTFCCRMNSDTVDYDDACLIVRYLASMRPFAQSFDIYLTQ
Nucleotide Sequence ATGACTTTTTGTTGCAGGATGAACTCTGATACTGTGGACTATGATGATGCTTGCTTGATTGTTCGATACTTGGCCTCCATGAGGCCGTTTGCCCAGAGCTTTGATATTTATTTGACACAG
CircID chr5:37020544|37020877
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MHRAENRKKFLRSIIKTTPSQFSTLK
Nucleotide Sequence ATGCATCGAGCTGAAAACCGAAAAAAGTTTCTTAGAAGCATTATCAAAACCACACCTTCTCAGTTTAGCACATTAAAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab