CircRNA Information

General Information
circRNA Basic Information
CircID chr5:40834207|40834561
Strand +
CircType exon
Host Gene ENSG00000145592.12;
Algorism CIRI2;
Sequence ACGTTGTGCCGCCGCTGTGGCTCTAAGGCCTACCACCTTCAGAAGTCGACCTGTGGCAAATGTGGCTACCCTGCCAAGCGCAAGAGAAAGTGTAAGTAACATTTTTCAGGCCAACTGTGTTAGCTTTTGTTTGTATTGCACTTAAGTGGGGGCATAGGTTTGAACTTTATTTGGTGCCTATCTTAAAACTCGTACATCTGTATGCCGATGAGGTGGCATAAAACTCGTGTGTTAACAACACCTACAAGGTGTGTGGGAGAACACCGTTTGAAATCTTTTCTGAACTTATGTTTTAGATAACTGGAGTGCCAAGGCTAAAAGACGAAATACCACCGGAACTGGTCGAATGAGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:40834207|40834561 hsa-miR-96-5p 0 0 1
chr5:40834207|40834561 hsa-miR-96-3p 0 0 1
chr5:40834207|40834561 hsa-miR-130a-5p 0 0 1
chr5:40834207|40834561 hsa-miR-130a-3p 0 0 1
chr5:40834207|40834561 hsa-miR-150-5p 0 0 1
chr5:40834207|40834561 hsa-miR-150-3p 0 0 1
chr5:40834207|40834561 hsa-miR-302a-5p 0 0 1
chr5:40834207|40834561 hsa-miR-302a-3p 0 0 1
chr5:40834207|40834561 hsa-miR-301a-5p 0 0 1
chr5:40834207|40834561 hsa-miR-301a-3p 0 0 1
chr5:40834207|40834561 hsa-miR-130b-5p 0 0 1
chr5:40834207|40834561 hsa-miR-130b-3p 0 0 1
chr5:40834207|40834561 hsa-miR-302b-5p 0 0 1
chr5:40834207|40834561 hsa-miR-302b-3p 0 0 1
chr5:40834207|40834561 hsa-miR-302c-5p 0 0 1
chr5:40834207|40834561 hsa-miR-302c-3p 0 0 1
chr5:40834207|40834561 hsa-miR-302d-5p 0 0 1
chr5:40834207|40834561 hsa-miR-302d-3p 0 0 1
chr5:40834207|40834561 hsa-miR-372-5p 0 0 1
chr5:40834207|40834561 hsa-miR-372-3p 0 0 1
chr5:40834207|40834561 hsa-miR-373-5p 0 0 1
chr5:40834207|40834561 hsa-miR-373-3p 0 0 1
chr5:40834207|40834561 hsa-miR-493-5p 0 0 1
chr5:40834207|40834561 hsa-miR-493-3p 0 0 1
chr5:40834207|40834561 hsa-miR-520e-5p 0 0 1
chr5:40834207|40834561 hsa-miR-520e-3p 0 0 1
chr5:40834207|40834561 hsa-miR-520b-5p 0 0 1
chr5:40834207|40834561 hsa-miR-520b-3p 0 0 1
chr5:40834207|40834561 hsa-miR-553 0 0 1
chr5:40834207|40834561 hsa-miR-561-5p 0 0 1
chr5:40834207|40834561 hsa-miR-561-3p 0 0 1
chr5:40834207|40834561 hsa-miR-607 0 0 1
chr5:40834207|40834561 hsa-miR-1271-5p 0 0 1
chr5:40834207|40834561 hsa-miR-1271-3p 0 0 1
chr5:40834207|40834561 hsa-miR-454-5p 0 0 1
chr5:40834207|40834561 hsa-miR-454-3p 0 0 1
chr5:40834207|40834561 hsa-miR-1298-5p 0 0 1
chr5:40834207|40834561 hsa-miR-1298-3p 0 0 1
chr5:40834207|40834561 hsa-miR-301b-5p 0 0 1
chr5:40834207|40834561 hsa-miR-301b-3p 0 0 1
chr5:40834207|40834561 hsa-miR-1228-5p 0 0 1
chr5:40834207|40834561 hsa-miR-1228-3p 0 0 1
chr5:40834207|40834561 hsa-miR-302e 0 0 1
chr5:40834207|40834561 hsa-miR-145-5p 0 0 1
chr5:40834207|40834561 hsa-miR-532-3p 0 1 1
chr5:40834207|40834561 hsa-miR-142-5p 0 0 1
chr5:40834207|40834561 hsa-miR-508-5p 0 0 1
chr5:40834207|40834561 hsa-miR-188-3p 0 0 1
chr5:40834207|40834561 hsa-miR-1207-5p 0 1 1
chr5:40834207|40834561 hsa-miR-520d-3p 0 0 1
chr5:40834207|40834561 hsa-miR-519b-3p 0 0 1
chr5:40834207|40834561 hsa-miR-519c-3p 0 0 1
chr5:40834207|40834561 hsa-miR-520a-3p 0 0 1
chr5:40834207|40834561 hsa-miR-520c-3p 0 0 1
chr5:40834207|40834561 hsa-miR-491-3p 0 0 1
chr5:40834207|40834561 hsa-miR-362-3p 0 0 1
chr5:40834207|40834561 hsa-miR-329 0 0 1
chr5:40834207|40834561 hsa-miR-519a 0 0 1
chr5:40834207|40834561 hsa-miR-663a 1 0 0
chr5:40834207|40834561 hsa-miR-4273 0 1 0
chr5:40834207|40834561 hsa-miR-3943 1 0 0
chr5:40834207|40834561 hsa-miR-3960 0 1 0
chr5:40834207|40834561 hsa-miR-5191 0 1 0
chr5:40834207|40834561 hsa-miR-323a-5p 1 0 0
chr5:40834207|40834561 hsa-miR-212-5p 0 1 0
chr5:40834207|40834561 hsa-miR-4713-5p 0 1 0
chr5:40834207|40834561 hsa-miR-4715-3p 0 1 0
chr5:40834207|40834561 hsa-miR-6889-3p 0 1 0
chr5:40834207|40834561 hsa-miR-6755-5p 0 1 0
chr5:40834207|40834561 hsa-miR-371b-3p 1 0 0
chr5:40834207|40834561 hsa-miR-140-3p 1 0 0
chr5:40834207|40834561 hsa-miR-4763-3p 1 0 0
chr5:40834207|40834561 hsa-miR-6851-5p 1 1 0
chr5:40834207|40834561 hsa-miR-6817-5p 1 0 0
chr5:40834207|40834561 hsa-miR-5195-3p 0 1 0
chr5:40834207|40834561 hsa-miR-1245b-5p 0 1 0
chr5:40834207|40834561 hsa-miR-548f-5p 0 1 0
chr5:40834207|40834561 hsa-miR-4423-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:40834207|40834561
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MCRRCGSKAYHLQKSTCGKCGYPAKRKRKCK
Nucleotide Sequence TTGTGCCGCCGCTGTGGCTCTAAGGCCTACCACCTTCAGAAGTCGACCTGTGGCAAATGTGGCTACCCTGCCAAGCGCAAGAGAAAGTGTAAGTAA
CircID chr5:40834207|40834561
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPMRWHKTRVLTTPTRCVGEHRLKSFLNLCFR
Nucleotide Sequence ATGCCGATGAGGTGGCATAAAACTCGTGTGTTAACAACACCTACAAGGTGTGTGGGAGAACACCGTTTGAAATCTTTTCTGAACTTATGTTTTAGATAA
CircID chr5:40834207|40834561
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MKNVTYTFSCAWQGSHICHRSTSEGGRP
Nucleotide Sequence CTGAAAAATGTTACTTACACTTTCTCTTGCGCTTGGCAGGGTAGCCACATTTGCCACAGGTCGACTTCTGAAGGTGGTAGGCCTTAG
CircID chr5:40834207|40834561
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MLLTLSLALGRVATFATGRLLKVVGLRATAAAQR
Nucleotide Sequence ATGTTACTTACACTTTCTCTTGCGCTTGGCAGGGTAGCCACATTTGCCACAGGTCGACTTCTGAAGGTGGTAGGCCTTAGAGCCACAGCGGCGGCACAACGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab