CircRNA Information

General Information
circRNA Basic Information
CircID chr5:43380105|43380284
Strand +
CircType exon
Host Gene ENSG00000151882.10;
Algorism CIRI2;
Sequence CTTTTGCCTCCCCCAGTCAGTTCTTGGAGCAGCACTAGTTAGGGGCCCAGAGTTCGGCCTTCTGTGTGGTGATTTTACGCTCTGCCTAAACAAGGAGCCTACATCTTTTAGCTCCTATTCCACCCTTCTCACACGTTTTTGTTGTTGTTTGGTTGTTTTTTTTTGAGACAGAGTCTCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:43380105|43380284 hsa-miR-197-5p 0 0 1
chr5:43380105|43380284 hsa-miR-197-3p 0 0 1
chr5:43380105|43380284 hsa-miR-326 1 1 1
chr5:43380105|43380284 hsa-miR-520f-5p 0 0 1
chr5:43380105|43380284 hsa-miR-520f-3p 0 0 1
chr5:43380105|43380284 hsa-miR-610 0 0 1
chr5:43380105|43380284 hsa-miR-612 1 0 1
chr5:43380105|43380284 hsa-miR-625-5p 0 0 1
chr5:43380105|43380284 hsa-miR-625-3p 0 0 1
chr5:43380105|43380284 hsa-miR-637 0 0 1
chr5:43380105|43380284 hsa-miR-650 0 0 1
chr5:43380105|43380284 hsa-miR-708-5p 0 0 1
chr5:43380105|43380284 hsa-miR-708-3p 0 0 1
chr5:43380105|43380284 hsa-miR-940 0 0 1
chr5:43380105|43380284 hsa-miR-1253 0 0 1
chr5:43380105|43380284 hsa-miR-1275 0 0 1
chr5:43380105|43380284 hsa-miR-296-5p 0 0 1
chr5:43380105|43380284 hsa-miR-512-3p 0 1 1
chr5:43380105|43380284 hsa-miR-28-5p 0 0 1
chr5:43380105|43380284 hsa-miR-330-5p 0 1 1
chr5:43380105|43380284 hsa-miR-220b 0 0 1
chr5:43380105|43380284 hsa-miR-371-5p 0 0 1
chr5:43380105|43380284 hsa-miR-1300 0 0 1
chr5:43380105|43380284 hsa-miR-1285 0 0 1
chr5:43380105|43380284 hsa-miR-608 1 0 0
chr5:43380105|43380284 hsa-miR-665 1 0 0
chr5:43380105|43380284 hsa-miR-3132 0 1 0
chr5:43380105|43380284 hsa-miR-3139 0 1 0
chr5:43380105|43380284 hsa-miR-3154 1 1 0
chr5:43380105|43380284 hsa-miR-4448 0 1 0
chr5:43380105|43380284 hsa-miR-4473 0 1 0
chr5:43380105|43380284 hsa-miR-4513 1 1 0
chr5:43380105|43380284 hsa-miR-4656 1 0 0
chr5:43380105|43380284 hsa-miR-4673 1 0 0
chr5:43380105|43380284 hsa-miR-4739 1 0 0
chr5:43380105|43380284 hsa-miR-5194 1 1 0
chr5:43380105|43380284 hsa-miR-6745 0 1 0
chr5:43380105|43380284 hsa-miR-6863 0 1 0
chr5:43380105|43380284 hsa-miR-4435 1 0 0
chr5:43380105|43380284 hsa-miR-6765-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6894-5p 1 0 0
chr5:43380105|43380284 hsa-miR-8071 1 0 0
chr5:43380105|43380284 hsa-miR-3663-3p 1 0 0
chr5:43380105|43380284 hsa-miR-6730-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6748-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6782-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6716-3p 0 1 0
chr5:43380105|43380284 hsa-miR-149-3p 1 0 0
chr5:43380105|43380284 hsa-miR-4732-3p 0 1 0
chr5:43380105|43380284 hsa-miR-6505-5p 0 1 0
chr5:43380105|43380284 hsa-miR-1207-5p 1 0 0
chr5:43380105|43380284 hsa-miR-4763-3p 1 0 0
chr5:43380105|43380284 hsa-miR-6769b-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6893-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6756-5p 1 0 0
chr5:43380105|43380284 hsa-miR-6819-5p 1 0 0
chr5:43380105|43380284 hsa-miR-10401-5p 1 1 0
chr5:43380105|43380284 hsa-miR-7111-5p 0 1 0
chr5:43380105|43380284 hsa-miR-6735-5p 1 0 0
chr5:43380105|43380284 hsa-miR-3187-5p 1 0 0
chr5:43380105|43380284 hsa-miR-4723-5p 0 1 0
chr5:43380105|43380284 hsa-miR-6831-5p 1 0 0
chr5:43380105|43380284 hsa-miR-939-5p 1 0 0
chr5:43380105|43380284 hsa-miR-4769-5p 0 1 0
chr5:43380105|43380284 hsa-miR-4665-5p 0 1 0
chr5:43380105|43380284 hsa-miR-4646-5p 1 0 0
chr5:43380105|43380284 hsa-miR-372-3p 1 0 0
chr5:43380105|43380284 hsa-miR-6864-3p 0 1 0
chr5:43380105|43380284 hsa-miR-7153-5p 1 0 0
chr5:43380105|43380284 hsa-miR-514b-5p 0 1 0
chr5:43380105|43380284 hsa-miR-377-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr5:43380105|43380284
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MCGDFTLCLNKEPTSFSSYSTLLTRFCCCLVVFF
Nucleotide Sequence CTGTGTGGTGATTTTACGCTCTGCCTAAACAAGGAGCCTACATCTTTTAGCTCCTATTCCACCCTTCTCACACGTTTTTGTTGTTGTTTGGTTGTTTTTTTTTGA
CircID chr5:43380105|43380284
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MFRQSVKSPHRRPNSGPLTSAAPRTDWGRQK
Nucleotide Sequence TTGTTTAGGCAGAGCGTAAAATCACCACACAGAAGGCCGAACTCTGGGCCCCTAACTAGTGCTGCTCCAAGAACTGACTGGGGGAGGCAAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab