CircRNA Information

General Information
circRNA Basic Information
CircID chr5:55941201|55941486
Strand -
CircType exon
Host Gene ENSG00000134352.18;
Algorism CIRI2;
Sequence CTGGACCAAAAGCATCTGCTGCAGAAACTTCCTGAAACATTTTCATTTGCCCAGATCCACAGGATTGTGAAATATGATCTGAAATCTGCTGTTTAAGTCTAACAAAATCTTCCTCATTGACTGATGAAACTTGCTTTGACCTTTCAAAATGTGAAATATCTGGACTGGATTCATGCTGACTGCAGTTCTGTTTGAAGTACTGTTGCCTGGGCAAAATACCATCACCGCCATCTACATGATCTACTAATTGTAGATCTTCTGGCCGCTCCTCTGAATCTAACAAGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:55941201|55941486 hsa-miR-23a-5p 0 0 1
chr5:55941201|55941486 hsa-miR-23a-3p 0 0 1
chr5:55941201|55941486 hsa-miR-107 0 0 1
chr5:55941201|55941486 hsa-miR-198 0 0 1
chr5:55941201|55941486 hsa-miR-23b-5p 0 0 1
chr5:55941201|55941486 hsa-miR-23b-3p 0 0 1
chr5:55941201|55941486 hsa-miR-133b 0 0 1
chr5:55941201|55941486 hsa-miR-488-5p 0 0 1
chr5:55941201|55941486 hsa-miR-488-3p 0 0 1
chr5:55941201|55941486 hsa-miR-612 0 0 1
chr5:55941201|55941486 hsa-miR-411-5p 0 0 1
chr5:55941201|55941486 hsa-miR-411-3p 0 0 1
chr5:55941201|55941486 hsa-miR-873-5p 0 0 1
chr5:55941201|55941486 hsa-miR-873-3p 0 0 1
chr5:55941201|55941486 hsa-miR-922 0 0 1
chr5:55941201|55941486 hsa-miR-1205 0 0 1
chr5:55941201|55941486 hsa-miR-1279 0 0 1
chr5:55941201|55941486 hsa-miR-513b-5p 0 0 1
chr5:55941201|55941486 hsa-miR-513b-3p 0 0 1
chr5:55941201|55941486 hsa-miR-1283 0 0 1
chr5:55941201|55941486 hsa-miR-1184 0 0 1
chr5:55941201|55941486 hsa-miR-330-3p 0 0 1
chr5:55941201|55941486 hsa-miR-455-3p 0 0 1
chr5:55941201|55941486 hsa-miR-509-3-5p 0 1 1
chr5:55941201|55941486 hsa-miR-509-5p 0 1 1
chr5:55941201|55941486 hsa-miR-103 0 0 1
chr5:55941201|55941486 hsa-miR-1285 0 0 1
chr5:55941201|55941486 hsa-miR-544 0 0 1
chr5:55941201|55941486 hsa-miR-768-3p 0 0 1
chr5:55941201|55941486 hsa-miR-133a 0 0 1
chr5:55941201|55941486 hsa-miR-151-3p 0 0 1
chr5:55941201|55941486 hsa-miR-101 0 0 1
chr5:55941201|55941486 hsa-miR-760 1 0 0
chr5:55941201|55941486 hsa-miR-1538 1 0 0
chr5:55941201|55941486 hsa-miR-3135a 1 0 0
chr5:55941201|55941486 hsa-miR-1193 1 0 0
chr5:55941201|55941486 hsa-miR-3916 1 0 0
chr5:55941201|55941486 hsa-miR-3974 0 1 0
chr5:55941201|55941486 hsa-miR-4752 0 1 0
chr5:55941201|55941486 hsa-miR-25-5p 1 0 0
chr5:55941201|55941486 hsa-miR-6854-5p 1 0 0
chr5:55941201|55941486 hsa-miR-7114-5p 0 1 0
chr5:55941201|55941486 hsa-miR-3677-5p 0 1 0
chr5:55941201|55941486 hsa-miR-6820-5p 1 0 0
chr5:55941201|55941486 hsa-miR-8069 1 0 0
chr5:55941201|55941486 hsa-miR-4742-5p 0 1 0
chr5:55941201|55941486 hsa-miR-1298-3p 0 1 0
chr5:55941201|55941486 hsa-miR-6803-5p 1 0 0
chr5:55941201|55941486 hsa-miR-6751-5p 1 0 0
chr5:55941201|55941486 hsa-miR-5189-5p 0 1 0
chr5:55941201|55941486 hsa-miR-1285-3p 0 1 0
chr5:55941201|55941486 hsa-miR-892c-5p 0 1 0
chr5:55941201|55941486 hsa-miR-101-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:55941201|55941486
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence LDQKHLLQKLPETFSFAQIHRIVKYDLKSAV
Nucleotide Sequence CTGGACCAAAAGCATCTGCTGCAGAAACTTCCTGAAACATTTTCATTTGCCCAGATCCACAGGATTGTGAAATATGATCTGAAATCTGCTGTTTAA
CircID chr5:55941201|55941486
ORF Type ORF2
Protein Length 94
Nucleotide Length 282
Protein Sequence MLDSEERPEDLQLVDHVDGGDGILPRQQYFKQNCSQHESSPDISHFERSKQVSSVNEEDFVRLKQQISDHISQSCGSGQMKMFQEVSAADAFGP
Nucleotide Sequence TTGTTAGATTCAGAGGAGCGGCCAGAAGATCTACAATTAGTAGATCATGTAGATGGCGGTGATGGTATTTTGCCCAGGCAACAGTACTTCAAACAGAACTGCAGTCAGCATGAATCCAGTCCAGATATTTCACATTTTGAAAGGTCAAAGCAAGTTTCATCAGTCAATGAGGAAGATTTTGTTAGACTTAAACAGCAGATTTCAGATCATATTTCACAATCCTGTGGATCTGGGCAAATGAAAATGTTTCAGGAAGTTTCTGCAGCAGATGCTTTTGGTCCA
CircID chr5:55941201|55941486
ORF Type ORF3
Protein Length 62
Nucleotide Length 189
Protein Sequence MAVMVFCPGNSTSNRTAVSMNPVQIFHILKGQSKFHQSMRKILLDLNSRFQIIFHNPVDLGK
Nucleotide Sequence ATGGCGGTGATGGTATTTTGCCCAGGCAACAGTACTTCAAACAGAACTGCAGTCAGCATGAATCCAGTCCAGATATTTCACATTTTGAAAGGTCAAAGCAAGTTTCATCAGTCAATGAGGAAGATTTTGTTAGACTTAAACAGCAGATTTCAGATCATATTTCACAATCCTGTGGATCTGGGCAAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab