CircRNA Information

General Information
circRNA Basic Information
CircID chr5:65590017|65590274
Strand -
CircType exon
Host Gene ENSG00000113595.13;
Algorism CIRI2;
Sequence CTACCATTATACATACATTATAATCAGGCACAATTTTTCAACTGTGTTCAGTTATATGCTAAGAATGTGCATTACAAAGTTTAGCAAAATTAGTGAAAAGGGAAGCAAGTTCACCTTAGTGTTACACTTTTTCTTCAATTAACTAGTAAACAGTTCAAGTTCTCACAAGCAATACAACACCTTTTTTATTTTTCACAGTTATTGAAATCAGTCAAATATTAAATAATTTAATTCGGAAGTATTATTTATGCACACAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:65590017|65590274 hsa-miR-18a-5p 0 0 1
chr5:65590017|65590274 hsa-miR-18a-3p 0 0 1
chr5:65590017|65590274 hsa-miR-204-5p 0 0 1
chr5:65590017|65590274 hsa-miR-204-3p 0 0 1
chr5:65590017|65590274 hsa-miR-211-5p 0 0 1
chr5:65590017|65590274 hsa-miR-211-3p 0 0 1
chr5:65590017|65590274 hsa-miR-200b-5p 0 0 1
chr5:65590017|65590274 hsa-miR-200b-3p 0 0 1
chr5:65590017|65590274 hsa-miR-137-5p 0 0 1
chr5:65590017|65590274 hsa-miR-137-3p 0 0 1
chr5:65590017|65590274 hsa-miR-141-5p 0 0 1
chr5:65590017|65590274 hsa-miR-141-3p 0 0 1
chr5:65590017|65590274 hsa-miR-146a-5p 0 0 1
chr5:65590017|65590274 hsa-miR-146a-3p 0 0 1
chr5:65590017|65590274 hsa-miR-200c-5p 0 0 1
chr5:65590017|65590274 hsa-miR-200c-3p 0 0 1
chr5:65590017|65590274 hsa-miR-200a-5p 0 0 1
chr5:65590017|65590274 hsa-miR-200a-3p 0 0 1
chr5:65590017|65590274 hsa-miR-374a-5p 0 0 1
chr5:65590017|65590274 hsa-miR-374a-3p 0 0 1
chr5:65590017|65590274 hsa-miR-18b-5p 0 0 1
chr5:65590017|65590274 hsa-miR-18b-3p 0 0 1
chr5:65590017|65590274 hsa-miR-429 0 0 1
chr5:65590017|65590274 hsa-miR-452-5p 0 0 1
chr5:65590017|65590274 hsa-miR-452-3p 0 0 1
chr5:65590017|65590274 hsa-miR-410-5p 0 0 1
chr5:65590017|65590274 hsa-miR-410-3p 0 0 1
chr5:65590017|65590274 hsa-miR-567 0 0 1
chr5:65590017|65590274 hsa-miR-568 0 0 1
chr5:65590017|65590274 hsa-miR-589-5p 0 0 1
chr5:65590017|65590274 hsa-miR-589-3p 0 0 1
chr5:65590017|65590274 hsa-miR-599 0 0 1
chr5:65590017|65590274 hsa-miR-623 0 0 1
chr5:65590017|65590274 hsa-miR-889-5p 0 0 1
chr5:65590017|65590274 hsa-miR-889-3p 0 0 1
chr5:65590017|65590274 hsa-miR-374b-5p 0 0 1
chr5:65590017|65590274 hsa-miR-374b-3p 0 0 1
chr5:65590017|65590274 hsa-miR-943 0 0 1
chr5:65590017|65590274 hsa-miR-944 0 0 1
chr5:65590017|65590274 hsa-miR-297 0 0 1
chr5:65590017|65590274 hsa-miR-146b-5p 0 0 1
chr5:65590017|65590274 hsa-miR-516a-3p 0 0 1
chr5:65590017|65590274 hsa-miR-590-3p 0 0 1
chr5:65590017|65590274 hsa-miR-369-3p 0 0 1
chr5:65590017|65590274 hsa-miR-550 0 0 1
chr5:65590017|65590274 hsa-miR-1201 0 0 1
chr5:65590017|65590274 hsa-miR-147 0 0 1
chr5:65590017|65590274 hsa-miR-194 0 0 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:65590017|65590274
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MLRMCITKFSKISEKGSKFTLVLHFFFN
Nucleotide Sequence ATGCTAAGAATGTGCATTACAAAGTTTAGCAAAATTAGTGAAAAGGGAAGCAAGTTCACCTTAGTGTTACACTTTTTCTTCAATTAA
CircID chr5:65590017|65590274
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MKKKCNTKVNLLPFSLILLNFVMHILSI
Nucleotide Sequence TTGAAGAAAAAGTGTAACACTAAGGTGAACTTGCTTCCCTTTTCACTAATTTTGCTAAACTTTGTAATGCACATTCTTAGCATATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab