CircRNA Information

General Information
circRNA Basic Information
CircID chr5:6604967|6605215
Strand +
CircType exon
Host Gene ENSG00000037474.13;
Algorism CIRI2;
Sequence AGCGGCTTAGATTTCATTTGGAGCAGACCGTGACATCTGCCCTCCCCACCTGTAGCGCTGGCTGTGGGTCCCTGAGCCTGCCCTTTGATTTCAGAGCTGTTGACTGACACAGGGCTGAATGGTTCCTGCCAGAGTCCTGAATCTGGTGGCCTGTGTCTTTTCTGTGCCCCATTCCCGCAGGGGGGTGAGCCATGGTGTAGTTCTCACAGCTCGCCCTCCTGGGCAGAGAAGGTACTAAAGGTGTAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:6604967|6605215 hsa-miR-223-5p 0 0 1
chr5:6604967|6605215 hsa-miR-223-3p 0 0 1
chr5:6604967|6605215 hsa-miR-146a-5p 0 0 1
chr5:6604967|6605215 hsa-miR-146a-3p 0 0 1
chr5:6604967|6605215 hsa-miR-484 0 1 1
chr5:6604967|6605215 hsa-miR-505-5p 0 0 1
chr5:6604967|6605215 hsa-miR-505-3p 0 0 1
chr5:6604967|6605215 hsa-miR-552-5p 0 0 1
chr5:6604967|6605215 hsa-miR-552-3p 0 0 1
chr5:6604967|6605215 hsa-miR-589-5p 0 0 1
chr5:6604967|6605215 hsa-miR-589-3p 0 0 1
chr5:6604967|6605215 hsa-miR-592 0 0 1
chr5:6604967|6605215 hsa-miR-597-5p 0 0 1
chr5:6604967|6605215 hsa-miR-597-3p 0 0 1
chr5:6604967|6605215 hsa-miR-421 0 0 1
chr5:6604967|6605215 hsa-miR-665 0 1 1
chr5:6604967|6605215 hsa-miR-873-5p 0 0 1
chr5:6604967|6605215 hsa-miR-873-3p 0 0 1
chr5:6604967|6605215 hsa-miR-939-5p 0 0 1
chr5:6604967|6605215 hsa-miR-939-3p 0 0 1
chr5:6604967|6605215 hsa-miR-942-5p 0 0 1
chr5:6604967|6605215 hsa-miR-942-3p 0 0 1
chr5:6604967|6605215 hsa-miR-1266-5p 0 0 1
chr5:6604967|6605215 hsa-miR-1266-3p 0 0 1
chr5:6604967|6605215 hsa-miR-491-5p 0 0 1
chr5:6604967|6605215 hsa-miR-486-3p 0 0 1
chr5:6604967|6605215 hsa-miR-146b-3p 0 1 1
chr5:6604967|6605215 hsa-miR-767-3p 0 0 1
chr5:6604967|6605215 hsa-miR-1207-5p 0 0 1
chr5:6604967|6605215 hsa-miR-324-3p 0 0 1
chr5:6604967|6605215 hsa-miR-146b-5p 0 1 1
chr5:6604967|6605215 hsa-miR-24 0 0 1
chr5:6604967|6605215 hsa-miR-641 0 1 0
chr5:6604967|6605215 hsa-miR-4270 1 0 0
chr5:6604967|6605215 hsa-miR-4518 0 1 0
chr5:6604967|6605215 hsa-miR-4527 0 1 0
chr5:6604967|6605215 hsa-miR-4651 1 0 0
chr5:6604967|6605215 hsa-miR-4710 1 0 0
chr5:6604967|6605215 hsa-miR-4734 0 1 0
chr5:6604967|6605215 hsa-miR-5695 0 1 0
chr5:6604967|6605215 hsa-miR-6825-5p 1 1 0
chr5:6604967|6605215 hsa-miR-10b-3p 0 1 0
chr5:6604967|6605215 hsa-miR-6716-5p 0 1 0
chr5:6604967|6605215 hsa-miR-3934-3p 0 1 0
chr5:6604967|6605215 hsa-miR-149-3p 1 0 0
chr5:6604967|6605215 hsa-miR-3616-3p 0 1 0
chr5:6604967|6605215 hsa-miR-6736-3p 1 0 0
chr5:6604967|6605215 hsa-miR-519d-5p 0 1 0
chr5:6604967|6605215 hsa-miR-1295b-3p 0 1 0
chr5:6604967|6605215 hsa-miR-6868-5p 0 1 0
chr5:6604967|6605215 hsa-miR-6802-3p 0 1 0
chr5:6604967|6605215 hsa-miR-3675-5p 0 1 0
chr5:6604967|6605215 hsa-miR-514a-5p 0 1 0
chr5:6604967|6605215 hsa-miR-579-5p 0 1 0
chr5:6604967|6605215 hsa-miR-4763-3p 1 0 0
chr5:6604967|6605215 hsa-miR-6787-5p 1 0 0
chr5:6604967|6605215 hsa-miR-6743-5p 1 0 0
chr5:6604967|6605215 hsa-miR-6763-5p 0 1 0
chr5:6604967|6605215 hsa-miR-6879-5p 1 1 0
chr5:6604967|6605215 hsa-miR-320a-5p 0 1 0
chr5:6604967|6605215 hsa-miR-4728-5p 0 1 0
chr5:6604967|6605215 hsa-miR-328-5p 1 0 0
chr5:6604967|6605215 hsa-miR-4632-5p 0 1 0
chr5:6604967|6605215 hsa-miR-4649-5p 0 1 0
chr5:6604967|6605215 hsa-miR-6735-5p 0 1 0
chr5:6604967|6605215 hsa-miR-6883-5p 1 1 0
chr5:6604967|6605215 hsa-miR-6887-5p 1 0 0
chr5:6604967|6605215 hsa-miR-4436b-3p 0 1 0
chr5:6604967|6605215 hsa-miR-7843-5p 0 1 0
chr5:6604967|6605215 hsa-miR-6785-5p 1 1 0
chr5:6604967|6605215 hsa-miR-6862-3p 0 1 0
chr5:6604967|6605215 hsa-miR-6529-5p 1 0 0
chr5:6604967|6605215 hsa-miR-6503-5p 0 1 0
chr5:6604967|6605215 hsa-miR-3617-5p 0 1 0
chr5:6604967|6605215 hsa-miR-122b-3p 0 1 0
chr5:6604967|6605215 hsa-miR-7153-5p 0 1 0
chr5:6604967|6605215 hsa-miR-4724-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:6604967|6605215
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence MISELLTDTGLNGSCQSPESGGLCLFCAPFPQGGEPWCSSHSSPSWAEKVLKV
Nucleotide Sequence TTGATTTCAGAGCTGTTGACTGACACAGGGCTGAATGGTTCCTGCCAGAGTCCTGAATCTGGTGGCCTGTGTCTTTTCTGTGCCCCATTCCCGCAGGGGGGTGAGCCATGGTGTAGTTCTCACAGCTCGCCCTCCTGGGCAGAGAAGGTACTAAAGGTGTAG
CircID chr5:6604967|6605215
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MVPARVLNLVACVFSVPHSRRGVSHGVVLTARPPGQRRY
Nucleotide Sequence ATGGTTCCTGCCAGAGTCCTGAATCTGGTGGCCTGTGTCTTTTCTGTGCCCCATTCCCGCAGGGGGGTGAGCCATGGTGTAGTTCTCACAGCTCGCCCTCCTGGGCAGAGAAGGTACTAA
CircID chr5:6604967|6605215
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MEQTVTSALPTCSAGCGSLSLPFDFRAVD
Nucleotide Sequence TTGGAGCAGACCGTGACATCTGCCCTCCCCACCTGTAGCGCTGGCTGTGGGTCCCTGAGCCTGCCCTTTGATTTCAGAGCTGTTGACTGA
CircID chr5:6604967|6605215
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MREWGTEKTQATRFRTLAGTIQPCVSQQL
Nucleotide Sequence CTGCGGGAATGGGGCACAGAAAAGACACAGGCCACCAGATTCAGGACTCTGGCAGGAACCATTCAGCCCTGTGTCAGTCAACAGCTCTGA
CircID chr5:6604967|6605215
ORF Type ORF5
Protein Length 70
Nucleotide Length 213
Protein Sequence MPRRASCENYTMAHPPAGMGHRKDTGHQIQDSGRNHSALCQSTALKSKGRLRDPQPALQVGRADVTVCSK
Nucleotide Sequence CTGCCCAGGAGGGCGAGCTGTGAGAACTACACCATGGCTCACCCCCCTGCGGGAATGGGGCACAGAAAAGACACAGGCCACCAGATTCAGGACTCTGGCAGGAACCATTCAGCCCTGTGTCAGTCAACAGCTCTGAAATCAAAGGGCAGGCTCAGGGACCCACAGCCAGCGCTACAGGTGGGGAGGGCAGATGTCACGGTCTGCTCCAAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab