CircRNA Information

General Information
circRNA Basic Information
CircID chr5:69167988|69168224
Strand -
CircType exon
Host Gene ENSG00000134057.13;
Algorism CIRI2;
Sequence CTCCAAGCCCGGACTGAGGCCAAGAACAGCTCTTGGGGACATTGGTAACAAAGTCAGTGAACAACTGCAGGCCAAAATGCCTATGAAGAAGGTAACTCTCTTCCTGACCTAACTTCTGTAAGAGCCCGCCTTCCAACTGTGGCCTTTGATGCAGAAACATTTCATTCTCTCTGTTTCATCTACAGGAAGCAAAACCTTCAGCTACTGGAAAAGTCATTGATAAAAAACTACCAAAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:69167988|69168224 hsa-miR-335-5p 0 0 1
chr5:69167988|69168224 hsa-miR-335-3p 0 0 1
chr5:69167988|69168224 hsa-miR-376b-5p 0 0 1
chr5:69167988|69168224 hsa-miR-376b-3p 0 0 1
chr5:69167988|69168224 hsa-miR-493-5p 0 0 1
chr5:69167988|69168224 hsa-miR-493-3p 0 0 1
chr5:69167988|69168224 hsa-miR-432-5p 0 0 1
chr5:69167988|69168224 hsa-miR-432-3p 0 0 1
chr5:69167988|69168224 hsa-miR-494-5p 0 0 1
chr5:69167988|69168224 hsa-miR-494-3p 0 0 1
chr5:69167988|69168224 hsa-miR-600 0 0 1
chr5:69167988|69168224 hsa-miR-873-5p 0 0 1
chr5:69167988|69168224 hsa-miR-873-3p 0 0 1
chr5:69167988|69168224 hsa-miR-1248 0 1 1
chr5:69167988|69168224 hsa-miR-486-5p 0 0 1
chr5:69167988|69168224 hsa-miR-145-5p 0 0 1
chr5:69167988|69168224 hsa-miR-770-5p 0 0 1
chr5:69167988|69168224 hsa-miR-455-3p 0 0 1
chr5:69167988|69168224 hsa-miR-516a-3p 0 0 1
chr5:69167988|69168224 hsa-miR-544 0 0 1
chr5:69167988|69168224 hsa-miR-376a 0 0 1
chr5:69167988|69168224 hsa-miR-203 0 0 1
chr5:69167988|69168224 hsa-miR-1183 0 1 0
chr5:69167988|69168224 hsa-miR-1295a 1 0 0
chr5:69167988|69168224 hsa-miR-3141 1 0 0
chr5:69167988|69168224 hsa-miR-4298 1 0 0
chr5:69167988|69168224 hsa-miR-3909 1 0 0
chr5:69167988|69168224 hsa-miR-4523 1 0 0
chr5:69167988|69168224 hsa-miR-5190 1 0 0
chr5:69167988|69168224 hsa-miR-6088 1 1 0
chr5:69167988|69168224 hsa-miR-6125 1 0 0
chr5:69167988|69168224 hsa-miR-8072 1 0 0
chr5:69167988|69168224 hsa-miR-12122 1 0 0
chr5:69167988|69168224 hsa-miR-6765-5p 1 0 0
chr5:69167988|69168224 hsa-miR-4753-5p 0 1 0
chr5:69167988|69168224 hsa-miR-4677-5p 0 1 0
chr5:69167988|69168224 hsa-miR-30b-3p 0 1 0
chr5:69167988|69168224 hsa-miR-1908-5p 1 0 0
chr5:69167988|69168224 hsa-miR-5003-3p 0 1 0
chr5:69167988|69168224 hsa-miR-1295b-3p 1 0 0
chr5:69167988|69168224 hsa-miR-2277-5p 1 0 0
chr5:69167988|69168224 hsa-miR-6768-3p 0 1 0
chr5:69167988|69168224 hsa-miR-4717-5p 0 1 0
chr5:69167988|69168224 hsa-miR-6885-3p 0 1 0
chr5:69167988|69168224 hsa-miR-1233-5p 1 0 0
chr5:69167988|69168224 hsa-miR-6778-5p 1 0 0
chr5:69167988|69168224 hsa-miR-10396b-5p 1 0 0
chr5:69167988|69168224 hsa-miR-6856-5p 0 1 0
chr5:69167988|69168224 hsa-miR-10398-3p 1 0 0
chr5:69167988|69168224 hsa-miR-3173-3p 1 0 0
chr5:69167988|69168224 hsa-miR-541-3p 1 0 0
chr5:69167988|69168224 hsa-miR-10400-3p 1 0 0
chr5:69167988|69168224 hsa-miR-5195-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr5:69167988|69168224
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MRPRTALGDIGNKVSEQLQAKMPMKKVTLFLT
Nucleotide Sequence CTGAGGCCAAGAACAGCTCTTGGGGACATTGGTAACAAAGTCAGTGAACAACTGCAGGCCAAAATGCCTATGAAGAAGGTAACTCTCTTCCTGACCTAA
CircID chr5:69167988|69168224
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MWPLMQKHFILSVSSTGSKTFSYWKSH
Nucleotide Sequence CTGTGGCCTTTGATGCAGAAACATTTCATTCTCTCTGTTTCATCTACAGGAAGCAAAACCTTCAGCTACTGGAAAAGTCATTGA
CircID chr5:69167988|69168224
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MKVLLPVDETERMKCFCIKGHSWKAGSYRS
Nucleotide Sequence CTGAAGGTTTTGCTTCCTGTAGATGAAACAGAGAGAATGAAATGTTTCTGCATCAAAGGCCACAGTTGGAAGGCGGGCTCTTACAGAAGTTAG
CircID chr5:69167988|69168224
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MACSCSLTLLPMSPRAVLGLSPGLE
Nucleotide Sequence TTGGCCTGCAGTTGTTCACTGACTTTGTTACCAATGTCCCCAAGAGCTGTTCTTGGCCTCAGTCCGGGCTTGGAG
CircID chr5:69167988|69168224
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MFLHQRPQLEGGLLQKLGQEESYLLHRHFGLQLFTDFVTNVPKSCSWPQSGLG
Nucleotide Sequence ATGTTTCTGCATCAAAGGCCACAGTTGGAAGGCGGGCTCTTACAGAAGTTAGGTCAGGAAGAGAGTTACCTTCTTCATAGGCATTTTGGCCTGCAGTTGTTCACTGACTTTGTTACCAATGTCCCCAAGAGCTGTTCTTGGCCTCAGTCCGGGCTTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab