CircRNA Information

General Information
circRNA Basic Information
CircID chr5:72196224|72196338
Strand +
CircType exon
Host Gene ENSG00000131711.13;
Algorism CIRI2;
Sequence TGGCCACAGACTCCCTCTTCTCCCTGATGTATGCATCAGCCTCCGCCTTGGCACTTTCCTCATCCTCAGTGGGGCTGTGCTTGGAGGCGCTCACACATACGTGTTCCTCCCCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:72196224|72196338 hsa-miR-17-5p 0 0 1
chr5:72196224|72196338 hsa-miR-17-3p 0 0 1
chr5:72196224|72196338 hsa-miR-20a-5p 0 0 1
chr5:72196224|72196338 hsa-miR-20a-3p 0 0 1
chr5:72196224|72196338 hsa-miR-93-5p 0 0 1
chr5:72196224|72196338 hsa-miR-93-3p 0 0 1
chr5:72196224|72196338 hsa-miR-106a-5p 0 0 1
chr5:72196224|72196338 hsa-miR-106a-3p 0 0 1
chr5:72196224|72196338 hsa-miR-106b-5p 0 0 1
chr5:72196224|72196338 hsa-miR-106b-3p 0 0 1
chr5:72196224|72196338 hsa-miR-20b-5p 0 0 1
chr5:72196224|72196338 hsa-miR-20b-3p 0 0 1
chr5:72196224|72196338 hsa-miR-519d-5p 0 0 1
chr5:72196224|72196338 hsa-miR-519d-3p 0 0 1
chr5:72196224|72196338 hsa-miR-658 0 0 1
chr5:72196224|72196338 hsa-miR-939-5p 0 0 1
chr5:72196224|72196338 hsa-miR-939-3p 0 0 1
chr5:72196224|72196338 hsa-miR-663b 0 0 1
chr5:72196224|72196338 hsa-miR-1253 0 0 1
chr5:72196224|72196338 hsa-miR-1255a 0 1 1
chr5:72196224|72196338 hsa-miR-1281 0 0 1
chr5:72196224|72196338 hsa-miR-485-5p 0 0 1
chr5:72196224|72196338 hsa-miR-339-3p 0 1 1
chr5:72196224|72196338 hsa-miR-1255b 0 0 1
chr5:72196224|72196338 hsa-miR-1185 0 0 1
chr5:72196224|72196338 hsa-miR-499-3p 0 0 1
chr5:72196224|72196338 hsa-miR-765 1 0 0
chr5:72196224|72196338 hsa-miR-2110 1 0 0
chr5:72196224|72196338 hsa-miR-3175 1 0 0
chr5:72196224|72196338 hsa-miR-4270 1 1 0
chr5:72196224|72196338 hsa-miR-3929 0 1 0
chr5:72196224|72196338 hsa-miR-4441 0 1 0
chr5:72196224|72196338 hsa-miR-2392 1 0 0
chr5:72196224|72196338 hsa-miR-4516 1 0 0
chr5:72196224|72196338 hsa-miR-4689 1 0 0
chr5:72196224|72196338 hsa-miR-4706 1 0 0
chr5:72196224|72196338 hsa-miR-4739 1 0 0
chr5:72196224|72196338 hsa-miR-5703 1 0 0
chr5:72196224|72196338 hsa-miR-5787 1 0 0
chr5:72196224|72196338 hsa-miR-6127 0 1 0
chr5:72196224|72196338 hsa-miR-8075 0 1 0
chr5:72196224|72196338 hsa-miR-8085 1 0 0
chr5:72196224|72196338 hsa-miR-8089 1 0 0
chr5:72196224|72196338 hsa-miR-12128 1 0 0
chr5:72196224|72196338 hsa-miR-138-5p 0 1 0
chr5:72196224|72196338 hsa-miR-3150a-3p 1 0 0
chr5:72196224|72196338 hsa-miR-7106-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6825-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6894-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6857-5p 1 0 0
chr5:72196224|72196338 hsa-miR-25-5p 0 1 0
chr5:72196224|72196338 hsa-miR-6799-5p 1 0 0
chr5:72196224|72196338 hsa-miR-5187-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6746-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6742-5p 1 0 0
chr5:72196224|72196338 hsa-miR-3605-5p 0 1 0
chr5:72196224|72196338 hsa-miR-3180-3p 1 0 0
chr5:72196224|72196338 hsa-miR-6798-5p 1 1 0
chr5:72196224|72196338 hsa-miR-6760-5p 1 1 0
chr5:72196224|72196338 hsa-miR-6810-5p 1 0 0
chr5:72196224|72196338 hsa-miR-7855-5p 1 0 0
chr5:72196224|72196338 hsa-miR-5006-5p 1 1 0
chr5:72196224|72196338 hsa-miR-7109-5p 1 0 0
chr5:72196224|72196338 hsa-miR-1229-5p 1 0 0
chr5:72196224|72196338 hsa-miR-1228-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6771-5p 1 0 0
chr5:72196224|72196338 hsa-miR-149-3p 1 0 0
chr5:72196224|72196338 hsa-miR-3162-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6818-5p 0 1 0
chr5:72196224|72196338 hsa-miR-10400-5p 1 0 0
chr5:72196224|72196338 hsa-miR-1207-5p 1 0 0
chr5:72196224|72196338 hsa-miR-4763-3p 1 0 0
chr5:72196224|72196338 hsa-miR-6787-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6870-5p 1 0 0
chr5:72196224|72196338 hsa-miR-1343-5p 1 0 0
chr5:72196224|72196338 hsa-miR-3180 1 0 0
chr5:72196224|72196338 hsa-miR-6737-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6803-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6819-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6751-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6780a-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6788-5p 1 0 0
chr5:72196224|72196338 hsa-miR-7111-5p 1 0 0
chr5:72196224|72196338 hsa-miR-4728-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6836-5p 1 0 0
chr5:72196224|72196338 hsa-miR-328-5p 1 0 0
chr5:72196224|72196338 hsa-miR-4649-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6777-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6794-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6795-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6848-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6858-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6889-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6885-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6731-5p 1 1 0
chr5:72196224|72196338 hsa-miR-6856-5p 1 0 0
chr5:72196224|72196338 hsa-miR-4700-5p 1 1 0
chr5:72196224|72196338 hsa-miR-4747-5p 1 0 0
chr5:72196224|72196338 hsa-miR-6766-5p 1 0 0
chr5:72196224|72196338 hsa-miR-33b-3p 0 1 0
chr5:72196224|72196338 hsa-miR-1255b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr5:72196224|72196338
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MHQPPPWHFPHPQWGCAWRRSHIRVPPH
Nucleotide Sequence ATGCATCAGCCTCCGCCTTGGCACTTTCCTCATCCTCAGTGGGGCTGTGCTTGGAGGCGCTCACACATACGTGTTCCTCCCCAT
CircID chr5:72196224|72196338
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MMYASASALALSSSSVGLCLEALTHTCSSP
Nucleotide Sequence CTGATGTATGCATCAGCCTCCGCCTTGGCACTTTCCTCATCCTCAGTGGGGCTGTGCTTGGAGGCGCTCACACATACGTGTTCCTCCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab