CircRNA Information

General Information
circRNA Basic Information
CircID chr5:76652750|76665175
Strand +
CircType exon
Host Gene ENSG00000145703.15;
Algorism find_circ;CIRI2;DCC;
Sequence GCTTTTTGGAAAGGATATAAACAACGGAAGGAGTATATGCACAGGCGGCAAACGTTCATTGATAATACTGATTCTATTGTGAAGATTCAGTCCTGGTTCCGAATGGCAACTGCAAGAAAGAGCTATCTTTCAAGACTACAGTATTTCAGAGATCATAATAATGAAATTGTGAAAATACAGTCACTGTTGAGAGCGAACAAAGCTAGAGATGACTACAAAACATTGGTTGGCTCTGAAAACCCACCATTAACAGTAATTCGCAAATTTGTATACCTGCTGGACCAAAGTGATTTGGATTTCCAGGAGGAACTAGAGGTTGCACGATTAAGGGAAGAAGTAGTGACCAAGATCAGGGCCAATCAACAGCTGGAAAAAGACCTGAACCTGATGGACATCAAGATTGGACTGCTGGTGAAGAACAGGATCACACTAGAGGATGTAATTTCACATAGTAAAAAGCTGAACAAGAAAAAAGGAGGAGAAATGGAAATACTGAATAACACCGACAACCAAGGAATAAAAAGTTTGAGTAAGGAGAGGAGAAAAACACTAGAAACATATCAGCAGCTGTTTTACCTTTTACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr5:76652750|76665175 hsa-miR-9-5p 0 1 1
chr5:76652750|76665175 hsa-miR-26b-3p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr5:76652750|76665175
ORF Type ORF1
Protein Length 183
Nucleotide Length 549
Protein Sequence MHRRQTFIDNTDSIVKIQSWFRMATARKSYLSRLQYFRDHNNEIVKIQSLLRANKARDDYKTLVGSENPPLTVIRKFVYLLDQSDLDFQEELEVARLREEVVTKIRANQQLEKDLNLMDIKIGLLVKNRITLEDVISHSKKLNKKKGGEMEILNNTDNQGIKSLSKERRKTLETYQQLFYLLQ
Nucleotide Sequence ATGCACAGGCGGCAAACGTTCATTGATAATACTGATTCTATTGTGAAGATTCAGTCCTGGTTCCGAATGGCAACTGCAAGAAAGAGCTATCTTTCAAGACTACAGTATTTCAGAGATCATAATAATGAAATTGTGAAAATACAGTCACTGTTGAGAGCGAACAAAGCTAGAGATGACTACAAAACATTGGTTGGCTCTGAAAACCCACCATTAACAGTAATTCGCAAATTTGTATACCTGCTGGACCAAAGTGATTTGGATTTCCAGGAGGAACTAGAGGTTGCACGATTAAGGGAAGAAGTAGTGACCAAGATCAGGGCCAATCAACAGCTGGAAAAAGACCTGAACCTGATGGACATCAAGATTGGACTGCTGGTGAAGAACAGGATCACACTAGAGGATGTAATTTCACATAGTAAAAAGCTGAACAAGAAAAAAGGAGGAGAAATGGAAATACTGAATAACACCGACAACCAAGGAATAAAAAGTTTGAGTAAGGAGAGGAGAAAAACACTAGAAACATATCAGCAGCTGTTTTACCTTTTACAG

CircID chr5:76652750|76665175
ORF Type ORF2
Protein Length 45
Nucleotide Length 135
Protein Sequence MFLVFFSSPYSNFLFLGCRCYSVFPFLLLFSCSAFYYVKLHPLV*
Nucleotide Sequence ATGTTTCTAGTGTTTTTCTCCTCTCCTTACTCAAACTTTTTATTCCTTGGTTGTCGGTGTTATTCAGTATTTCCATTTCTCCTCCTTTTTTCTTGTTCAGCTTTTTACTATGTGAAATTACATCCTCTAGTGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr5:76652750|76665175 DGCR8 1 0 0
chr5:76652750|76665175 U2AF2 0 0 2
chr5:76652750|76665175 NOP58 0 0 4
chr5:76652750|76665175 PRPF8 0 1 0
chr5:76652750|76665175 MSI2 0 0 3
chr5:76652750|76665175 FAM120A 0 0 1
chr5:76652750|76665175 LIN28B 0 2 7
chr5:76652750|76665175 FUS 2 0 0
chr5:76652750|76665175 FXR1 0 0 2
chr5:76652750|76665175 RBM22 0 1 0
chr5:76652750|76665175 TAF15 0 1 0
chr5:76652750|76665175 FMR1 0 0 1
chr5:76652750|76665175 HNRNPL 0 3 0
chr5:76652750|76665175 IGF2BP3 0 0 1
chr5:76652750|76665175 EIF4A3 0 1 7
chr5:76652750|76665175 AGO2 0 0 2